CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.151954.1.S1_a_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g58180: PBS lyase HEAT-like repeat-containing protein (HF=6e-26)

Module size 6 genes

NF 0.68

%ile 95.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.97 PtpAffx.151954.1.S1_a_at CV259016 hypothetical protein - 6e-26 At3g58180 PBS lyase HEAT-like repeat-containing protein O.I. H.G. S.X.
0.77 94.9 0.97 PtpAffx.151954.3.S1_at CX186472 hypothetical protein - 7e-33 At3g58180 PBS lyase HEAT-like repeat-containing protein O.I. H.G. S.X.
0.67 91.1 0.97 PtpAffx.285.1.S1_at CX178284 hypothetical protein - 1e-68 At1g76550 pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative O.I. H.G. S.X.
0.53 80.5 0.96 PtpAffx.13452.1.S1_at CV235856 hypothetical protein - 2e-6 At5g63910 FCLY (FARNESYLCYSTEINE LYASE) O.I. H.G. S.X.
0.50 78.6 0.98 PtpAffx.151954.1.S1_at CV259016 hypothetical protein - 6e-26 At3g58180 PBS lyase HEAT-like repeat-containing protein O.I. H.G. S.X.
0.43 69.7 0.97 PtpAffx.34173.1.S1_at CV227862 hypothetical protein - 2e+0 At3g15358 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	99.2	0.97	PtpAffx.151954.1.S1_a_at	CV259016	hypothetical protein	-	6e-26	At3g58180	PBS lyase HEAT-like repeat-containing protein	O.I.	H.G.	S.X.
0.77	94.9	0.97	PtpAffx.151954.3.S1_at	CX186472	hypothetical protein	-	7e-33	At3g58180	PBS lyase HEAT-like repeat-containing protein	O.I.	H.G.	S.X.
0.67	91.1	0.97	PtpAffx.285.1.S1_at	CX178284	hypothetical protein	-	1e-68	At1g76550	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	O.I.	H.G.	S.X.
0.53	80.5	0.96	PtpAffx.13452.1.S1_at	CV235856	hypothetical protein	-	2e-6	At5g63910	FCLY (FARNESYLCYSTEINE LYASE)	O.I.	H.G.	S.X.
0.50	78.6	0.98	PtpAffx.151954.1.S1_at	CV259016	hypothetical protein	-	6e-26	At3g58180	PBS lyase HEAT-like repeat-containing protein	O.I.	H.G.	S.X.
0.43	69.7	0.97	PtpAffx.34173.1.S1_at	CV227862	hypothetical protein	-	2e+0	At3g15358	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	99.2	0.94	PtpAffx.18098.2.S1_at	CV263810	hypothetical protein	-	3e-5	At3g10985	SAG20 (SENESCENCE ASSOCIATED GENE 20)	O.I.	H.G.	S.X.
0.80	96.0	0.97	Ptp.7929.1.S1_at	CV268940	hypothetical protein	-	3e-2	At4g33660	unknown protein	O.I.	H.G.	S.X.
0.73	93.6	0.96	Ptp.3530.1.S1_at	CV262873	hypothetical protein	-	1e-1	At5g25280	serine-rich protein-related	O.I.	H.G.	S.X.
0.71	92.6	0.97	PtpAffx.203390.1.S1_at	pmrna6745	hypothetical protein	-	3e-20	At2g33550	gt-2-related	O.I.	H.G.	S.X.
0.67	91.1	0.94	PtpAffx.156497.1.S1_s_at	CX170513	hypothetical protein	-	3e-4	At5g62390	ATBAG7 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 7)	O.I.	H.G.	S.X.
0.60	86.0	0.96	PtpAffx.20626.1.S1_at	CV227655	hypothetical protein	-	6e+0	At5g13200	GRAM domain-containing protein / ABA-responsive protein-related	O.I.	H.G.	S.X.
0.53	80.5	0.96	PtpAffx.32904.1.A1_at	CV258986	hypothetical protein	-	6e-6	At4g25300	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.
0.50	78.6	0.94	PtpAffx.23657.2.S1_s_at	DN487900	hypothetical protein	-	5e-2	At5g49190	SUS2 (SUCROSE SYNTHASE 2)	O.I.	H.G.	S.X.
0.50	78.6	0.95	PtpAffx.27718.2.S1_at	BU820090	hypothetical protein	-	6e-21	At1g21000	zinc-binding family protein	O.I.	H.G.	S.X.
0.50	78.6	0.95	PtpAffx.206318.1.S1_at	pmrna12544	hypothetical protein	-	5e-1	At5g01380	transcription factor	O.I.	H.G.	S.X.
0.48	75.4	0.95	PtpAffx.49298.2.S1_s_at	AJ768916	hypothetical protein	-	9e-2	At2g36320	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.
0.48	75.4	0.95	PtpAffx.9409.2.S1_at	CV249779	hypothetical protein	-	1e-2	At3g13340	WD-40 repeat family protein	O.I.	H.G.	S.X.
0.47	74.6	0.94	PtpAffx.23077.1.S1_at	BP929443	-	-	1e-21	At2g22200	AP2 domain-containing transcription factor	O.I.	H.G.	S.X.
0.46	73.7	0.93	Ptp.7026.1.S1_s_at	DN496899	hypothetical protein	-	9e-1	At5g60520	late embryogenesis abundant protein-related / LEA protein-related	O.I.	H.G.	S.X.
0.44	71.9	0.93	PtpAffx.136901.1.S1_at	DN496160	hypothetical protein	-	1e-1	At5g65280	GCL1 (GCR2-LIKE 1)	O.I.	H.G.	S.X.
0.44	71.9	0.96	PtpAffx.221437.1.S1_s_at	pmrna38325	hypothetical protein	-	3e+0	At5g54450	unknown protein	O.I.	H.G.	S.X.
0.43	69.7	0.92	PtpAffx.23657.1.S1_s_at	BP928698	hypothetical protein	-	6e-42	At5g49190	SUS2 (SUCROSE SYNTHASE 2)	O.I.	H.G.	S.X.
0.43	69.7	0.94	PtpAffx.74457.1.S1_at	CB239510	hypothetical protein	-	3e-16	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	O.I.	H.G.	S.X.
0.43	69.7	0.97	Ptp.3295.1.S1_at	BU813448	hypothetical protein	-	1e-3	At3g05545	transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein	O.I.	H.G.	S.X.
0.42	68.6	0.93	Ptp.7653.1.S1_s_at	CV256026	hypothetical protein	-	4e-7	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	O.I.	H.G.	S.X.
0.42	68.6	0.95	PtpAffx.74457.1.S1_s_at	CB239510	hypothetical protein	-	3e-16	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	O.I.	H.G.	S.X.
0.40	67.0	0.93	Ptp.2206.2.A1_a_at	DN486584	hypothetical protein	-	6e-8	At5g65280	GCL1 (GCR2-LIKE 1)	O.I.	H.G.	S.X.
0.40	67.0	0.95	PtpAffx.3096.2.S1_s_at	CF231355	-	-	5e-7	At2g25900	ATCTH	O.I.	H.G.	S.X.
0.38	63.7	0.96	Ptp.6553.2.A1_at	CK093504	hypothetical protein	-	6e-1	At5g29000	myb family transcription factor	O.I.	H.G.	S.X.
0.36	61.6	0.87	PtpAffx.249.173.S1_at	CV240024	hypothetical protein	-	2e+0	At5g09430	hydrolase	O.I.	H.G.	S.X.
0.36	61.6	0.96	Ptp.3323.1.S1_s_at	CV267890	AP2/ERF domain-containing transcription factor	-	1e-11	At5g51190	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.
0.36	61.6	0.95	PtpAffx.217250.1.S1_at	pmrna32437	hypothetical protein	-	3e-1	At1g34750	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.
0.35	59.7	0.92	Ptp.1501.1.A1_s_at	CK093594	hypothetical protein	-	4e-23	At2g18190	AAA-type ATPase family protein	O.I.	H.G.	S.X.
0.35	59.7	0.95	PtpAffx.84646.1.S1_at	DN483684	hypothetical protein	-	2e+0	At4g32208	-	O.I.	H.G.	S.X.
0.35	59.7	0.96	PtpAffx.70374.1.S1_at	CK095549	hypothetical protein	-	2e-9	At2g21620	RD2	O.I.	H.G.	S.X.
0.33	57.5	0.93	Ptp.5488.1.S1_at	AI162649	hypothetical protein	-	2e-3	At1g80610	unknown protein	O.I.	H.G.	S.X.
0.33	57.5	0.93	PtpAffx.29171.1.S1_at	DN486239	hypothetical protein	-	2e+0	At5g23350	GRAM domain-containing protein / ABA-responsive protein-related	O.I.	H.G.	S.X.
0.32	55.2	0.93	PtpAffx.4733.3.S1_at	CV249325	hypothetical protein	-	1e-14	At2g15890	MEE14 (maternal effect embryo arrest 14)	O.I.	H.G.	S.X.
0.31	53.7	0.93	PtpAffx.10911.1.S1_at	BP931086	hypothetical protein	-	2e-25	At4g27450	unknown protein	O.I.	H.G.	S.X.
0.31	53.7	0.95	PtpAffx.217359.1.S1_at	pmrna32583	hypothetical protein	-	3e-13	At1g62310	transcription factor jumonji (jmjC) domain-containing protein	O.I.	H.G.	S.X.
0.31	53.7	0.93	PtpAffx.202729.1.S1_at	pmrna5456	hypothetical protein	-	1e+0	At3g51730	saposin B domain-containing protein	O.I.	H.G.	S.X.
0.31	53.7	0.96	PtpAffx.145512.1.S1_at	BU820184	vacuolar H+-translocating inorganic pyrophosphatase	-	1e-7	At1g15690	AVP1	O.I.	H.G.	S.X.
0.30	52.0	0.92	PtpAffx.75787.2.A1_s_at	CV256635	AP2/ERF domain-containing transcription factor	-	1e+0	At2g19720	rps15ab (ribosomal protein S15A B)	O.I.	H.G.	S.X.
0.30	52.0	0.91	Ptp.219.1.A1_at	CK096322	-	-	1e-22	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	O.I.	H.G.	S.X.
0.30	52.0	0.93	PtpAffx.219965.1.S1_s_at	pmrna36156	hypothetical protein	-	4e-38	At4g15130	catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase	O.I.	H.G.	S.X.
0.30	52.0	0.94	Ptp.1292.1.S1_at	BU894111	hypothetical protein	-	1e+0	At4g27290	ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	O.I.	H.G.	S.X.
0.30	52.0	0.95	PtpAffx.4042.1.S1_at	CV241460	hypothetical protein	-	1e-1	At3g62550	universal stress protein (USP) family protein	O.I.	H.G.	S.X.
0.29	50.5	0.96	PtpAffx.69346.1.A1_at	CV260517	iaa-amino acid hydrolase 8	-	6e+0	At5g26210	AL4 (ALFIN-LIKE 4)	O.I.	H.G.	S.X.
0.28	50.5	0.90	PtpAffx.149305.1.S1_at	CF235238	hypothetical protein	-	9e-1	At4g08351	unknown protein	O.I.	H.G.	S.X.
0.27	47.1	0.89	PtpAffx.21139.1.S1_at	BU889382	hypothetical protein	-	2e-15	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	O.I.	H.G.	S.X.
0.27	47.1	0.96	PtpAffx.14710.2.S1_s_at	AJ769160	hypothetical protein	-	3e-1	At2g02060	transcription factor	O.I.	H.G.	S.X.
0.27	47.1	0.91	Ptp.7599.2.S1_at	BU813871	-	-	9e-20	At3g14110	FLU (FLUORESCENT IN BLUE LIGHT)	O.I.	H.G.	S.X.
0.27	47.1	0.93	PtpAffx.47384.1.S1_at	CV236090	-	-	5e-1	At5g50345	-	O.I.	H.G.	S.X.
0.27	47.1	0.95	PtpAffx.61027.6.A1_a_at	CV257573	hypothetical protein	-	3e-2	At2g26230	uricase / urate oxidase / nodulin 35, putative	O.I.	H.G.	S.X.
0.27	47.1	0.96	PtpAffx.5423.2.A1_a_at	CV242446	hypothetical protein	-	1e-13	At4g32840	PFK6 (PHOSPHOFRUCTOKINASE 6)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.2 96.8 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.0 96.6 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3 93.7 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
5.2	96.8	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.0	96.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3	93.7	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	PtpAffx.151954.1.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g58180: PBS lyase HEAT-like repeat-containing protein (HF=6e-26)
Module size	6 genes
NF	0.68
%ile	95.1

Co-expression analysis

Gene ID PtpAffx.151954.1.S1_a_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At3g58180: PBS lyase HEAT-like repeat-containing protein (HF=6e-26) Module size 6 genes NF 0.68 %ile 95.1

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.151954.1.S1_a_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g58180: PBS lyase HEAT-like repeat-containing protein (HF=6e-26)

Module size 6 genes

NF 0.68

%ile 95.1

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays