CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.151954.1.S1_a_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g58180: PBS lyase HEAT-like repeat-containing protein (HF=6e-26)

Module size 6 genes

NF 0.68

%ile 95.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.97 PtpAffx.151954.1.S1_a_at CV259016 hypothetical protein - 6e-26 At3g58180 PBS lyase HEAT-like repeat-containing protein O.I. H.G. S.X.
0.77 94.9 0.97 PtpAffx.151954.3.S1_at CX186472 hypothetical protein - 7e-33 At3g58180 PBS lyase HEAT-like repeat-containing protein O.I. H.G. S.X.
0.67 91.1 0.97 PtpAffx.285.1.S1_at CX178284 hypothetical protein - 1e-68 At1g76550 pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative O.I. H.G. S.X.
0.53 80.5 0.96 PtpAffx.13452.1.S1_at CV235856 hypothetical protein - 2e-6 At5g63910 FCLY (FARNESYLCYSTEINE LYASE) O.I. H.G. S.X.
0.50 78.6 0.98 PtpAffx.151954.1.S1_at CV259016 hypothetical protein - 6e-26 At3g58180 PBS lyase HEAT-like repeat-containing protein O.I. H.G. S.X.
0.43 69.7 0.97 PtpAffx.34173.1.S1_at CV227862 hypothetical protein - 2e+0 At3g15358 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.2 96.8 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.0 96.6 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3 93.7 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the maize gene, Zm.19098.1.A1_at, orthologous to the query gene, PtpAffx.151954.1.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 Zm.19098.1.A1_at At3g58180 hypothetical protein LOC100191312 - 4e+0 At1g21960 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.55 71.6 Zm.477.2.A1_at At3g58180 hypothetical protein LOC100274928 - 2e-75 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) O.I. H.G. S.X.
0.44 55.7 Zm.5927.2.S1_at At3g58180 Hypothetical protein LOC100194338 - 1e-38 At2g44350 ATCS O.I. H.G. S.X.
0.38 44.2 Zm.5016.1.A1_at At3g58180 - - 2e-19 At2g04030 CR88 O.I. H.G. S.X.
0.28 28.1 Zm.70.1.A1_at At3g58180 acyl carrier protein1 - 2e+0 At1g54580 ACP2 (ACYL CARRIER PROTEIN 2) O.I. H.G. S.X.
0.27 24.6 Zm.4666.1.A1_at At3g58180 LSM7-like - 2e+0 At5g23290 PDF5 (PREFOLDIN 5) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera

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