Co-expression analysis

Gene ID	PtpAffx.151954.1.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g58180: PBS lyase HEAT-like repeat-containing protein (HF=6e-26)
Module size	6 genes
NF	0.68
%ile	95.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.97	PtpAffx.151954.1.S1_a_at	CV259016	hypothetical protein	-	6e-26	At3g58180	PBS lyase HEAT-like repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.97	PtpAffx.151954.3.S1_at	CX186472	hypothetical protein	-	7e-33	At3g58180	PBS lyase HEAT-like repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.97	PtpAffx.285.1.S1_at	CX178284	hypothetical protein	-	1e-68	At1g76550	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.96	PtpAffx.13452.1.S1_at	CV235856	hypothetical protein	-	2e-6	At5g63910	FCLY (FARNESYLCYSTEINE LYASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.98	PtpAffx.151954.1.S1_at	CV259016	hypothetical protein	-	6e-26	At3g58180	PBS lyase HEAT-like repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.97	PtpAffx.34173.1.S1_at	CV227862	hypothetical protein	-	2e+0	At3g15358	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.8	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.0	96.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3	93.7	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the grape gene, 1611999_at, orthologous to the query gene, PtpAffx.151954.1.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1611999_at	At3g58180	-	-	3e-1	At2g45950	ASK20 (ARABIDOPSIS SKP1-LIKE 20)	O.I.	H.G.	S.X.	Please select
0.08	8.5	1609587_at	At3g58180	-	-	5e-9	At1g32220	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.04	5.2	1620075_at	At3g58180	-	-	6e+0	At5g49410	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.2	1621017_at	At3g58180	-	-	5e+0	At5g48530	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	1611003_x_at	At3g58180	-	-	1e+0	At5g57565	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	1610082_at	At3g58180	-	-	9e-14	At5g48030	GFA2 (GAMETOPHYTIC FACTOR 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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