Co-expression analysis

Gene ID	PtpAffx.151041.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g20850: XCP2 (xylem cysteine peptidase 2) (HF=3e-1)
Module size	14 genes
NF	0.60
%ile	89.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	97.5	0.83	PtpAffx.151041.1.S1_s_at	AJ780822	hypothetical protein	-	3e-1	At1g20850	XCP2 (xylem cysteine peptidase 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.85	97.2	0.85	Ptp.5991.1.S1_at	AJ780742	-	-	4e-2	At3g49340	cysteine proteinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.93	PtpAffx.46665.2.S1_at	DN492397	hypothetical protein	-	8e-2	At4g28690	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	PtpAffx.46665.1.S1_s_at	CV245219	hypothetical protein	-	3e-1	At1g51080	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.93	PtpAffx.207923.1.S1_at	pmrna15725	hypothetical protein	-	4e-20	At1g60470	AtGolS4 (Arabidopsis thaliana galactinol synthase 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.88	PtpAffx.119513.1.A1_at	BP933166	-	-	5e+0	At4g18890	brassinosteroid signalling positive regulator-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	0.91	PtpAffx.204008.1.S1_s_at	pmrna7902	hypothetical protein	-	2e-36	At1g73370	SUS6 (SUCROSE SYNTHASE 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	0.91	PtpAffx.222211.1.S1_at	pmrna39476	GRAS family transcription factor	-	3e+0	At5g46730	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.94	PtpAffx.200041.1.S1_s_at	pmrna70	hypothetical protein	-	6e-1	At2g14750	APK (APS KINASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.51	78.9	0.92	PtpAffx.107876.1.A1_at	CV262541	hypothetical protein	-	3e-2	At5g39220	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.90	PtpAffx.54125.1.A1_s_at	CK095265	cytochrome P450 /// cytochrome P450 /// cytochrome P450	-	3e+0	At5g57260	CYP71B10	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.91	PtpAffx.10075.2.S1_at	AJ780844	-	-	8e-39	At3g15500	ANAC055 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.93	PtpAffx.63638.1.A1_at	CV232434	hypothetical protein	-	4e-1	At4g32860	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.93	PtpAffx.30786.1.A1_at	AJ775362	hypothetical protein	-	2e-11	At3g17760	GAD5 (glutamate decarboxylase 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	94.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7	91.8	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3	89.8	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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