Co-expression analysis

Gene ID	PtpAffx.15088.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g12330: LRP1 (LATERAL ROOT PRIMORDIUM 1) (HF=7e-3)
Module size	6 genes
NF	0.68
%ile	95.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.96	PtpAffx.15088.1.S1_at	CF936886	hypothetical protein	-	7e-3	At5g12330	LRP1 (LATERAL ROOT PRIMORDIUM 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.96	Ptp.3640.1.S1_at	BU895250	hypothetical protein	-	7e-2	At4g09890	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.96	Ptp.7446.1.S1_at	BU814736	hypothetical protein	-	2e+0	At3g21710	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.96	PtpAffx.149893.1.S1_s_at	DN486606	hypothetical protein	-	1e-8	At3g12950	catalytic	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	Ptp.5913.1.S1_s_at	CV244093	AP2/ERF domain-containing transcription factor	-	2e-15	At1g28360	ERF12 (ERF DOMAIN PROTEIN 12)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.96	PtpAffx.72354.1.S1_at	BU889551	hypothetical protein	-	3e+0	At4g14104	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	94.7	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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