Co-expression analysis

Gene ID	PtpAffx.148676.1.S1_at
Gene name	cytochrome P450 /// cytochrome P450 /// cytochrome P450
Homology with Arabidopsis	Similar to At3g26300: CYP71B34 (HF=1e-4)
Module size	6 genes
NF	0.38
%ile	64.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.88	PtpAffx.148676.1.S1_at	CK110328	cytochrome P450 /// cytochrome P450 /// cytochrome P450	-	1e-4	At3g26300	CYP71B34	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.89	PtpAffx.39736.2.A1_a_at	CV263341	cytochrome P450	-	1e-3	At3g26280	CYP71B4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.90	Ptp.4024.2.A1_at	CV275984	hypothetical protein	-	2e-75	At3g22890	APS1 (ATP SULFURYLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.89	PtpAffx.114927.1.A1_at	CV239325	-	-	2e-1	At5g38378	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.87	Ptp.6191.1.S1_at	CV235273	hypothetical protein	-	1e-30	At3g10300	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.88	PtpAffx.2376.1.S1_at	CV241004	hypothetical protein	-	6e-11	At1g01300	aspartyl protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	92.1	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, Ta.25348.1.A1_at, orthologous to the query gene, PtpAffx.148676.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.25348.1.A1_at	At3g26300	-	-	2e+0	At3g13700	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.44	64.5	TaAffx.4898.1.S1_at	At3g26300	-	-	4e+0	At2g01530	MLP329 (MLP-LIKE PROTEIN 329)	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.25400.1.A1_at	At3g26300	-	-	1e-1	At1g62060	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	Ta.9084.3.S1_at	At3g26300	-	-	1e+1	At5g50050	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.10	11.3	Ta.28609.1.S1_x_at	At3g26300	-	-	8e-15	At2g19750	40S ribosomal protein S30 (RPS30A)	O.I.	H.G.	S.X.	Please select
0.09	10.4	TaAffx.50210.1.S1_at	At3g26300	-	-	7e-2	At1g60880	AGL56	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage