CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.148676.1.S1_at

Gene name cytochrome P450 /// cytochrome P450 /// cytochrome P450
Homology with Arabidopsis Similar to At3g26300: CYP71B34 (HF=1e-4)

Module size 6 genes

NF 0.38

%ile 64.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.88 PtpAffx.148676.1.S1_at CK110328 cytochrome P450 /// cytochrome P450 /// cytochrome P450 - 1e-4 At3g26300 CYP71B34 O.I. H.G. S.X.
0.67 91.1 0.89 PtpAffx.39736.2.A1_a_at CV263341 cytochrome P450 - 1e-3 At3g26280 CYP71B4 O.I. H.G. S.X.
0.38 63.7 0.90 Ptp.4024.2.A1_at CV275984 hypothetical protein - 2e-75 At3g22890 APS1 (ATP SULFURYLASE 1) O.I. H.G. S.X.
0.36 61.6 0.89 PtpAffx.114927.1.A1_at CV239325 - - 2e-1 At5g38378 - O.I. H.G. S.X.
0.29 50.5 0.87 Ptp.6191.1.S1_at CV235273 hypothetical protein - 1e-30 At3g10300 calcium-binding EF hand family protein O.I. H.G. S.X.
0.16 26.9 0.88 PtpAffx.2376.1.S1_at CV241004 hypothetical protein - 6e-11 At1g01300 aspartyl protease family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.8 92.1 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6 91.3 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3 89.8 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2 89.3 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2 89.3 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g26300, orthologous to the query gene, PtpAffx.148676.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.36 43.6 At3g26300 822234 CYP71B34 putative cytochrome P450 O.I. H.G. S.X.
0.40 50.8 At1g51500 841575 CER5 (ECERIFERUM 5) Encodes an ABC transporter involved in cuticular wax biosynthesis. Lines carrying recessive mutations in this locus have weakly glaucous stem surface, and relative elevated secondary alcohols and ketones. O.I. H.G. S.X.
0.33 38.1 At1g01430 837247 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. H.G. S.X.
0.33 38.1 At3g16850 820938 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:vacuole, plant-type cell wall;PBFOMA O.I. H.G. S.X.
0.29 30.3 At4g35470 829699 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:plasma membrane;MPBOFAV O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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