Co-expression analysis

Gene ID	PtpAffx.148122.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g06640: 2-oxoglutarate-dependent dioxygenase, putative (HF=6e-3)
Module size	6 genes
NF	0.39
%ile	65.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.87	PtpAffx.148122.1.S1_at	CX176412	hypothetical protein	-	6e-3	At1g06640	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.89	PtpAffx.135709.1.S1_s_at	AJ779763	hypothetical protein	-	1e-2	At1g06650	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.89	Ptp.5092.1.S1_at	CV240783	-	-	3e-8	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.89	PtpAffx.215126.1.S1_s_at	pmrna29131	hypothetical protein	-	9e-1	At5g61760	ATIPK2BETA	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.89	Ptp.7231.1.A1_at	CV275703	4-coumarate-coa ligase	-	1e-11	At4g05160	4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.90	PtpAffx.200612.1.S1_at	pmrna1199	hypothetical protein	-	9e-6	At1g79900	BAC2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	96.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.2	95.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.8	94.9	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2	93.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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