Co-expression analysis

Gene ID PtpAffx.148122.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g06640: 2-oxoglutarate-dependent dioxygenase, putative (HF=6e-3)
Module size 6 genes
NF 0.39
%ile 65.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.87PtpAffx.148122.1.S1_atCX176412hypothetical protein-6e-3At1g066402-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.6791.10.89PtpAffx.135709.1.S1_s_atAJ779763hypothetical protein-1e-2At1g066502-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.5582.20.89Ptp.5092.1.S1_atCV240783--3e-8At4g17090CT-BMY (CHLOROPLAST BETA-AMYLASE)O.I.H.G.S.X.
0.4067.00.89PtpAffx.215126.1.S1_s_atpmrna29131hypothetical protein-9e-1At5g61760ATIPK2BETAO.I.H.G.S.X.
0.1830.80.89Ptp.7231.1.A1_atCV2757034-coumarate-coa ligase-1e-11At4g051604-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeO.I.H.G.S.X.
0.1729.10.90PtpAffx.200612.1.S1_atpmrna1199hypothetical protein-9e-6At1g79900BAC2O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.796.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.295.6GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
4.295.6GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
3.894.9GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
3.293.5GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.892.1GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.490.4GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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