Co-expression analysis

Gene ID	PtpAffx.14790.1.A1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g24090: ribosomal protein L35 family protein (HF=1e-1)
Module size	6 genes
NF	0.78
%ile	98.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.97	PtpAffx.14790.1.A1_s_at	CK091627	hypothetical protein	-	1e-1	At2g24090	ribosomal protein L35 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.98	Ptp.6638.1.S1_s_at	CV244428	hypothetical protein	-	5e-22	At1g79850	RPS17 (RIBOSOMAL PROTEIN S17)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.97	PtpAffx.7681.2.A1_at	CK091882	hypothetical protein	-	4e-17	At3g52150	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.98	PtpAffx.53128.1.S1_at	CV238625	-	-	7e-25	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.98	Ptp.5695.1.S1_a_at	CV237546	hypothetical protein	-	7e-21	At1g48350	ribosomal protein L18 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.98	PtpAffx.9317.1.S1_at	CV241750	hypothetical protein	-	1e+0	At4g14385	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	97.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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