Co-expression analysis

Gene ID PtpAffx.147676.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g30600: signal recognition particle receptor alpha subunit family protein (HF=3e-32)
Module size 6 genes
NF 0.49
%ile 79.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.95PtpAffx.147676.1.A1_atCV230317hypothetical protein-3e-32At4g30600signal recognition particle receptor alpha subunit family proteinO.I.H.G.S.X.
0.5582.20.95PtpAffx.205612.1.S1_atpmrna11079hypothetical protein-1e-17At1g03970GBF4O.I.H.G.S.X.
0.5078.60.95PtpAffx.5090.1.A1_atCV267261hypothetical protein-1e-1At3g09810isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.
0.5078.60.95PtpAffx.1601.13.S1_a_atCV240068hypothetical protein-5e+0At5g44306unknown proteinO.I.H.G.S.X.
0.3559.70.95PtpAffx.205178.1.S1_s_atpmrna10254hypothetical protein-4e-27At5g65000nucleotide-sugar transporter family proteinO.I.H.G.S.X.
0.2850.50.95PtpAffx.4085.4.S1_atCV244302hypothetical protein-3e-71At3g59350serine/threonine protein kinase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.897.4GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.697.2GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.597.1GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.896.4GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.694.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.389.8GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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