CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.14710.1.A1_a_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g62907: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.20

%ile 37.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.43 69.7 0.92 PtpAffx.14710.1.A1_a_at CV269309 hypothetical protein - 2e+0 At3g62907 unknown protein O.I. H.G. S.X.
0.33 57.5 0.92 PtpAffx.151469.1.S1_at DN494849 hypothetical protein - 7e-34 At2g13650 GONST1 (Golgi Nucleotide Sugar Transporter 1) O.I. H.G. S.X.
0.25 43.6 0.92 PtpAffx.24127.2.A1_a_at CV274197 hypothetical protein - 6e-6 At3g51000 epoxide hydrolase, putative O.I. H.G. S.X.
0.25 43.6 0.94 PtpAffx.3718.1.A1_at CX167706 hypothetical protein - 6e-31 At5g63620 oxidoreductase, zinc-binding dehydrogenase family protein O.I. H.G. S.X.
0.13 21.6 0.93 PtpAffx.30368.2.S1_s_at CX657356 hypothetical protein - 2e-3 At3g51730 saposin B domain-containing protein O.I. H.G. S.X.
0.11 18.1 0.92 PtpAffx.208691.1.S1_s_at pmrna17244 hypothetical protein - 2e-81 At1g60440 ATPANK1 (PANTOTHENATE KINASE 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.90	PtpAffx.17234.1.S1_at	CV261564	-	-	2e+0	At4g25310	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.
0.44	71.9	0.95	PtpAffx.158416.1.S1_at	CV131381	hypothetical protein	-	9e-24	At5g63620	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.
0.31	53.7	0.91	PtpAffx.23427.1.S1_s_at	CV280572	hypothetical protein	-	5e-4	At2g29490	ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1)	O.I.	H.G.	S.X.
0.31	53.7	0.94	PtpAffx.24127.1.S1_at	CV256258	hypothetical protein	-	6e-4	At3g51000	epoxide hydrolase, putative	O.I.	H.G.	S.X.
0.21	36.5	0.91	PtpAffx.249.26.A1_s_at	BP933372	hypothetical protein	-	1e-8	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	O.I.	H.G.	S.X.
0.18	30.8	0.90	PtpAffx.118422.2.S1_a_at	CK091385	hypothetical protein	-	1e-19	At3g47160	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.17	29.1	0.89	PtpAffx.34347.1.S1_at	BU832725	hypothetical protein	-	4e-10	At5g64250	2-nitropropane dioxygenase family / NPD family	O.I.	H.G.	S.X.
0.16	26.9	0.91	PtpAffx.54956.1.A1_s_at	BP934948	hypothetical protein	-	5e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	O.I.	H.G.	S.X.
0.15	25.3	0.89	PtpAffx.62561.1.A1_at	CV274753	hypothetical protein	-	2e+1	At5g45580	transcription factor	O.I.	H.G.	S.X.
0.15	25.3	0.93	PtpAffx.7148.2.S1_a_at	CV269699	-	-	2e-16	At5g38820	amino acid transporter family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.0 97.5 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0 88.0 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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