Co-expression analysis

Gene ID	PtpAffx.14710.1.A1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g62907: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.20
%ile	37.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.43	69.7	0.92	PtpAffx.14710.1.A1_a_at	CV269309	hypothetical protein	-	2e+0	At3g62907	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.92	PtpAffx.151469.1.S1_at	DN494849	hypothetical protein	-	7e-34	At2g13650	GONST1 (Golgi Nucleotide Sugar Transporter 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.92	PtpAffx.24127.2.A1_a_at	CV274197	hypothetical protein	-	6e-6	At3g51000	epoxide hydrolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.94	PtpAffx.3718.1.A1_at	CX167706	hypothetical protein	-	6e-31	At5g63620	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.93	PtpAffx.30368.2.S1_s_at	CX657356	hypothetical protein	-	2e-3	At3g51730	saposin B domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.92	PtpAffx.208691.1.S1_s_at	pmrna17244	hypothetical protein	-	2e-81	At1g60440	ATPANK1 (PANTOTHENATE KINASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	97.5	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0	88.0	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.56779.1.S1_at, orthologous to the query gene, PtpAffx.14710.1.A1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	67.9	TaAffx.56779.1.S1_at	At3g62907	-	-	1e+0	At3g53500	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	Ta.22524.2.S1_x_at	At3g62907	-	-	1e+1	At2g23130	AGP17 (ARABINOGALACTAN PROTEIN 17)	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.13199.3.S1_at	At3g62907	-	-	2e-1	At3g19150	KRP6 (KIP-RELATED PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.13199.3.S1_x_at	At3g62907	-	-	2e-1	At3g19150	KRP6 (KIP-RELATED PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.22524.1.S1_at	At3g62907	-	-	3e+0	At3g60820	PBF1	O.I.	H.G.	S.X.	Please select
0.59	79.8	Ta.22524.2.S1_at	At3g62907	-	-	1e+1	At2g23130	AGP17 (ARABINOGALACTAN PROTEIN 17)	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.8786.1.A1_at	At3g62907	-	-	3e+0	At1g53180	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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