Co-expression analysis

Gene ID PtpAffx.14710.1.A1_a_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g62907: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.20
%ile 37.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4369.70.92PtpAffx.14710.1.A1_a_atCV269309hypothetical protein-2e+0At3g62907unknown proteinO.I.H.G.S.X.
0.3357.50.92PtpAffx.151469.1.S1_atDN494849hypothetical protein-7e-34At2g13650GONST1 (Golgi Nucleotide Sugar Transporter 1)O.I.H.G.S.X.
0.2543.60.92PtpAffx.24127.2.A1_a_atCV274197hypothetical protein-6e-6At3g51000epoxide hydrolase, putativeO.I.H.G.S.X.
0.2543.60.94PtpAffx.3718.1.A1_atCX167706hypothetical protein-6e-31At5g63620oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.1321.60.93PtpAffx.30368.2.S1_s_atCX657356hypothetical protein-2e-3At3g51730saposin B domain-containing proteinO.I.H.G.S.X.
0.1118.10.92PtpAffx.208691.1.S1_s_atpmrna17244hypothetical protein-2e-81At1g60440ATPANK1 (PANTOTHENATE KINASE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.097.5GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.088.0GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage