Co-expression analysis

Gene ID	PtpAffx.146878.2.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g18500: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.24
%ile	43.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.83	PtpAffx.146878.2.A1_at	CV265444	hypothetical protein	-	1e+0	At4g18500	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.85	PtpAffx.208456.1.S1_at	pmrna16798	hypothetical protein	-	3e-5	At1g23460	polygalacturonase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.84	PtpAffx.216357.1.S1_s_at	pmrna31077	hypothetical protein	-	1e+0	At3g18010	WOX1 (WUSCHEL related homeobox 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.84	PtpAffx.70186.1.A1_at	CV228544	-	-	1e+0	At5g11340	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.84	PtpAffx.200160.1.S1_x_at	pmrna300	hypothetical protein	-	2e+0	At5g66658	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.84	PtpAffx.141052.1.A1_at	CV234597	-	-	2e+0	At3g24315	AtSec20	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.0	99.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.4	97.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.8	94.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0	92.9	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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