Co-expression analysis

Gene ID PtpAffx.146636.1.A1_at
Gene name calcium dependent protein kinase 16
Homology with ArabidopsisSimilar to At5g66210: CPK28 (HF=9e-15)
Module size 6 genes
NF 0.57
%ile 88.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.92PtpAffx.146636.1.A1_atCV268823calcium dependent protein kinase 16-9e-15At5g66210CPK28O.I.H.G.S.X.
0.8096.00.94PtpAffx.41142.1.S1_atCV255722hypothetical protein-5e-1At5g05360unknown proteinO.I.H.G.S.X.
0.6791.10.93PtpAffx.10687.1.S1_atCV228454--3e-15At3g21865PEX22 (peroxin 22)O.I.H.G.S.X.
0.6187.00.92PtpAffx.19543.1.A1_atCV230303hypothetical protein-4e-1At1g54730sugar transporter, putativeO.I.H.G.S.X.
0.6086.00.93PtpAffx.13638.1.S1_a_atCV226837hypothetical protein-5e-4At4g14410basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.2136.50.92PtpAffx.43105.1.A1_a_atCV256606hypothetical protein-3e-2At5g66730zinc finger (C2H2 type) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.898.0GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.395.8GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.393.7GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.785.5GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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