Co-expression analysis

Gene ID	PtpAffx.146199.1.A1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g16860: GCIP-interacting family protein (HF=2e-1)
Module size	6 genes
NF	0.56
%ile	87.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.97	PtpAffx.146199.1.A1_s_at	CV272864	hypothetical protein	-	2e-1	At2g16860	GCIP-interacting family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.18334.1.A1_at	CV232661	hypothetical protein	-	2e-57	At1g32130	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	PtpAffx.128896.1.S1_s_at	CN520124	-	-	8e-7	At2g21510	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.95	PtpAffx.26405.3.A1_at	BU830440	f-box family protein	-	5e-10	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	Ptp.5075.2.S1_s_at	AJ780256	-	-	2e-59	At1g61150	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.97	PtpAffx.9731.1.S1_at	CV255821	hypothetical protein	-	1e+1	At5g44582	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.0	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.3	93.7	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0	92.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7	91.8	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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