Co-expression analysis

Gene ID PtpAffx.145397.1.A1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g35450: AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) (HF=1e-35)
Module size 8 genes
NF 0.46
%ile 76.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5784.20.97PtpAffx.145397.1.A1_s_atCV251388hypothetical protein-1e-35At4g35450AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2)O.I.H.G.S.X.
0.6187.00.98Ptp.5276.1.S1_s_atCV268936hypothetical protein-1e-25At3g57870SCE1 (SUMO CONJUGATION ENZYME 1)O.I.H.G.S.X.
0.4875.40.97Ptp.8010.1.A1_s_atCV253864hypothetical protein-4e-21At3g03330short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.4875.40.97Ptp.2637.1.S1_atCV253647hypothetical protein-3e-58At5g11770NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrialO.I.H.G.S.X.
0.4067.00.97PtpAffx.88629.1.A1_atCV258833cholesterol transport protein-3e-30At4g38350hedgehog receptorO.I.H.G.S.X.
0.3559.70.97Ptp.5110.1.S1_atCV264650hypothetical protein-1e-29At5g18110NCBP (NOVEL CAP-BINDING PROTEIN)O.I.H.G.S.X.
0.3357.50.97PtpAffx.210951.1.S1_atpmrna21517hypothetical protein-2e-34At3g05010transmembrane protein, putativeO.I.H.G.S.X.
0.3357.50.98PtpAffx.32590.1.S1_atCV281093hypothetical protein-1e-29At5g42190ASK2 (ARABIDOPSIS SKP1-LIKE 2)O.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.393.7GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.791.8GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.389.8GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

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