Co-expression analysis

Gene ID	PtpAffx.145397.1.A1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g35450: AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) (HF=1e-35)
Module size	8 genes
NF	0.46
%ile	76.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.97	PtpAffx.145397.1.A1_s_at	CV251388	hypothetical protein	-	1e-35	At4g35450	AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.98	Ptp.5276.1.S1_s_at	CV268936	hypothetical protein	-	1e-25	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.97	Ptp.8010.1.A1_s_at	CV253864	hypothetical protein	-	4e-21	At3g03330	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.97	Ptp.2637.1.S1_at	CV253647	hypothetical protein	-	3e-58	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	PtpAffx.88629.1.A1_at	CV258833	cholesterol transport protein	-	3e-30	At4g38350	hedgehog receptor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.97	Ptp.5110.1.S1_at	CV264650	hypothetical protein	-	1e-29	At5g18110	NCBP (NOVEL CAP-BINDING PROTEIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.97	PtpAffx.210951.1.S1_at	pmrna21517	hypothetical protein	-	2e-34	At3g05010	transmembrane protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.98	PtpAffx.32590.1.S1_at	CV281093	hypothetical protein	-	1e-29	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	93.7	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7	91.8	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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