Co-expression analysis

Gene ID	PtpAffx.145060.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g35500: protein kinase family protein (HF=3e-23)
Module size	6 genes
NF	0.60
%ile	89.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.96	PtpAffx.145060.1.A1_at	CV249802	hypothetical protein	-	3e-23	At4g35500	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	PtpAffx.97277.1.S1_at	CV262016	hypothetical protein	-	8e-38	At5g51450	RIN3 (RPM1 INTERACTING PROTEIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.96	Ptp.3882.1.S1_at	CV264407	hypothetical protein	-	2e-19	At5g47120	ATBI1 (BAX INHIBITOR 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.10648.1.S1_a_at	CN519395	hypothetical protein	-	8e-74	At3g05580	serine/threonine protein phosphatase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.96	Ptp.1463.3.A1_s_at	CV263405	hypothetical protein	-	1e-4	At4g19200	proline-rich family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.97	PtpAffx.13438.1.S1_s_at	AI167052	hypothetical protein	-	2e-96	At3g28715	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	98.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5	94.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage