Co-expression analysis

Gene ID	PtpAffx.144999.1.A1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g47840: tic20 protein-related (HF=4e-1)
Module size	7 genes
NF	0.45
%ile	74.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.95	PtpAffx.144999.1.A1_s_at	CV244449	hypothetical protein	-	4e-1	At2g47840	tic20 protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.95	PtpAffx.49222.1.S1_at	BP930894	hypothetical protein	-	9e-25	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.95	Ptp.6633.1.S1_at	CV265141	-	-	7e-12	At3g47650	bundle-sheath defective protein 2 family / bsd2 family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.95	PtpAffx.206937.1.S1_at	pmrna13762	hypothetical protein	-	2e-71	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.95	Ptp.3467.1.S1_at	CK091206	hypothetical protein	-	4e-5	At3g59980	tRNA-binding region domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.95	PtpAffx.8187.1.A1_at	CV231619	hypothetical protein	-	1e-26	At2g35450	catalytic/ hydrolase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.95	Ptp.5867.1.S1_s_at	CV245725	hypothetical protein	-	1e-42	At1g04940	TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.0	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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