Co-expression analysis

Gene ID PtpAffx.144850.2.S1_at
Gene name chromo domain protein
Homology with ArabidopsisSimilar to At5g17690: TFL2 (TERMINAL FLOWER 2) (HF=2e-9)
Module size 6 genes
NF 0.38
%ile 64.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.96PtpAffx.144850.2.S1_atBU831488chromo domain protein-2e-9At5g17690TFL2 (TERMINAL FLOWER 2)O.I.H.G.S.X.
0.3559.70.96PtpAffx.210540.1.S1_atpmrna20664hypothetical protein-4e-5At3g08720S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2)O.I.H.G.S.X.
0.3357.50.96PtpAffx.214471.1.S1_s_atpmrna28145hypothetical protein-4e-17At5g58003CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4)O.I.H.G.S.X.
0.3153.70.96PtpAffx.211197.1.S1_atpmrna22007hypothetical protein-4e-15At3g20550DDL (DAWDLE)O.I.H.G.S.X.
0.2747.10.96PtpAffx.17087.1.S1_s_atCF230618hypothetical protein-2e-31At1g19880regulator of chromosome condensation (RCC1) family proteinO.I.H.G.S.X.
0.2441.80.96Ptp.7344.1.S1_s_atCX655055hypothetical protein-1e-60At2g44680CKB4 (CASEIN KINASE II BETA SUBUNIT 4)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.694.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.886.4GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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