Co-expression analysis

Gene ID PtpAffx.144840.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g26790: FUS3 (FUSCA 3) (HF=5e-3)
Module size 7 genes
NF 0.18
%ile 34.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4673.70.91PtpAffx.144840.1.S1_atDN499480hypothetical protein-5e-3At3g26790FUS3 (FUSCA 3)O.I.H.G.S.X.
0.2543.60.92PtpAffx.209170.1.S1_atpmrna18156hypothetical protein-4e-1At3g0556060S ribosomal protein L22-2 (RPL22B)O.I.H.G.S.X.
0.2034.60.93PtpAffx.18825.6.A1_atCV255492hypothetical protein-3e-23At5g12190RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.1932.70.92PtpAffx.40910.1.S1_atBU830361hypothetical protein-1e+0At2g43560immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinO.I.H.G.S.X.
0.1423.50.92Ptp.2085.2.S1_s_atCF231740hypothetical protein-2e-30At1g22300GRF10 (GENERAL REGULATORY FACTOR 10)O.I.H.G.S.X.
0.1321.60.92PtpAffx.206401.1.S1_atpmrna12715hypothetical protein-2e+0At5g10730binding / catalytic/ coenzyme bindingO.I.H.G.S.X.
0.1016.30.92PtpAffx.6024.2.S1_a_atBU825018hypothetical protein-3e-2At4g20010PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.992.5GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.691.3GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.088.0GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage