Co-expression analysis

Gene ID	PtpAffx.14449.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g51730: RWD domain-containing protein (HF=7e-32)
Module size	6 genes
NF	0.62
%ile	92.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.88	PtpAffx.14449.1.A1_at	CN520230	hypothetical protein	-	7e-32	At1g51730	RWD domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.89	PtpAffx.89264.1.A1_at	CV231419	hypothetical protein	-	2e-29	At5g17900	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.91	PtpAffx.36601.1.S1_at	CX171150	hypothetical protein	-	5e-63	At1g73720	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.89	PtpAffx.205267.1.S1_at	pmrna10447	hypothetical protein	-	1e-1	At4g28556	RIC7	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.88	PtpAffx.16450.3.S1_at	CV230882	hypothetical protein	-	1e-1	At5g01350	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.88	PtpAffx.94932.1.A1_at	CV266150	-	-	3e-1	At5g18820	EMB3007 (embryo defective 3007)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.2	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.1	88.6	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7	85.5	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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