Co-expression analysis

Gene ID	PtpAffx.143539.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g24870: self-incompatibility protein-related (HF=6e-1)
Module size	26 genes
NF	0.49
%ile	79.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.5	0.82	PtpAffx.143539.1.S1_at	CX184307	hypothetical protein	-	6e-1	At2g24870	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.89	97.8	0.83	PtpAffx.142075.1.S1_at	DN498647	-	-	6e+0	At3g20090	CYP705A18	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.82	96.3	0.85	Ptp.973.1.A1_at	CK089832	hypothetical protein	-	9e-1	At5g47670	NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.87	Ptp.8099.1.S1_at	DN491467	-	-	6e+0	At5g47130	Bax inhibitor-1 family / BI-1 family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.91	PtpAffx.207593.1.S1_x_at	pmrna15069	hypothetical protein	-	2e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	0.93	PtpAffx.9855.1.S1_at	BU891952	hypothetical protein	-	1e+0	At1g76480	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.93	PtpAffx.216568.1.S1_s_at	pmrna31422	hypothetical protein	-	5e-5	At2g36800	DOGT1 (DON-GLUCOSYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.91	PtpAffx.141.1.S1_at	CF229884	-	-	2e+0	At2g27580	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.92	PtpAffx.141.2.S1_at	DN493233	-	-	6e-2	At2g35410	33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.89	PtpAffx.19128.1.S1_at	AJ779721	hypothetical protein	-	3e+0	At5g48420	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.95	Ptp.2903.1.A1_s_at	BP934529	hypothetical protein	-	5e-16	At3g27620	AOX1C	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.95	PtpAffx.141628.1.S1_at	BU861542	multidrug/pheromone exporter, MDR family, ABC transporter family	-	1e-7	At3g62150	PGP21 (P-GLYCOPROTEIN 21)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.51	78.9	0.88	PtpAffx.207591.1.S1_x_at	pmrna15065	hypothetical protein	-	6e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.49	75.7	0.93	PtpAffx.87677.1.S1_at	CX182336	hypothetical protein	-	8e-2	At4g38470	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.93	PtpAffx.22198.1.S1_at	CK094234	ABC transporter family protein /// multidrug/pheromone exporter, MDR family, ABC transporter family	-	7e-12	At3g62150	PGP21 (P-GLYCOPROTEIN 21)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.45	72.3	0.93	PtpAffx.215318.1.S1_s_at	pmrna29438	hypothetical protein	-	1e+0	At5g61660	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.45	72.3	0.88	PtpAffx.207593.1.S1_at	pmrna15069	hypothetical protein	-	2e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.45	72.3	0.95	PtpAffx.223705.1.S1_x_at	pmrna41841	multidrug/pheromone exporter, MDR family, ABC transporter family /// multidrug/pheromone exporter, MDR family, ABC transporter family	-	6e-45	At1g02520	PGP11 (P-GLYCOPROTEIN 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.90	PtpAffx.156807.1.S1_at	CX168731	hypothetical protein	-	1e+0	At3g12955	auxin-responsive protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.90	PtpAffx.113686.1.S1_s_at	CF230954	hypothetical protein	-	3e-30	At5g07270	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.95	PtpAffx.223705.1.S1_at	pmrna41841	multidrug/pheromone exporter, MDR family, ABC transporter family /// multidrug/pheromone exporter, MDR family, ABC transporter family	-	6e-45	At1g02520	PGP11 (P-GLYCOPROTEIN 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.93	PtpAffx.90645.2.S1_at	CX657409	-	-	1e+0	At5g04750	F1F0-ATPase inhibitor protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.95	PtpAffx.49251.1.A1_at	CX175939	hypothetical protein	-	4e-29	At4g38470	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.90	PtpAffx.148504.1.S1_at	BU832827	aminotransferase family protein	-	2e-9	At5g53970	aminotransferase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.92	PtpAffx.99748.1.A1_at	DN491439	-	-	5e-1	At2g38905	hydrophobic protein, putative / low temperature and salt responsive protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.92	PtpAffx.46700.1.S1_at	CK097073	-	-	3e-5	At3g19190	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	96.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.2	89.3	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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