Co-expression analysis

Gene ID PtpAffx.143539.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g24870: self-incompatibility protein-related (HF=6e-1)
Module size 26 genes
NF 0.49
%ile 79.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9399.50.82PtpAffx.143539.1.S1_atCX184307hypothetical protein-6e-1At2g24870self-incompatibility protein-relatedO.I.H.G.S.X.
0.8997.80.83PtpAffx.142075.1.S1_atDN498647--6e+0At3g20090CYP705A18O.I.H.G.S.X.
0.8296.30.85Ptp.973.1.A1_atCK089832hypothetical protein-9e-1At5g47670NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)O.I.H.G.S.X.
0.6791.10.87Ptp.8099.1.S1_atDN491467--6e+0At5g47130Bax inhibitor-1 family / BI-1 familyO.I.H.G.S.X.
0.5984.90.91PtpAffx.207593.1.S1_x_atpmrna15069hypothetical protein-2e-2At4g13850GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)O.I.H.G.S.X.
0.5884.20.93PtpAffx.9855.1.S1_atBU891952hypothetical protein-1e+0At1g76480unknown proteinO.I.H.G.S.X.
0.5784.20.93PtpAffx.216568.1.S1_s_atpmrna31422hypothetical protein-5e-5At2g36800DOGT1 (DON-GLUCOSYLTRANSFERASE 1)O.I.H.G.S.X.
0.5683.90.91PtpAffx.141.1.S1_atCF229884--2e+0At2g27580zinc finger (AN1-like) family proteinO.I.H.G.S.X.
0.5683.90.92PtpAffx.141.2.S1_atDN493233--6e-2At2g3541033 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putativeO.I.H.G.S.X.
0.5582.20.89PtpAffx.19128.1.S1_atAJ779721hypothetical protein-3e+0At5g48420unknown proteinO.I.H.G.S.X.
0.5279.40.95Ptp.2903.1.A1_s_atBP934529hypothetical protein-5e-16At3g27620AOX1CO.I.H.G.S.X.
0.5279.40.95PtpAffx.141628.1.S1_atBU861542multidrug/pheromone exporter, MDR family, ABC transporter family-1e-7At3g62150PGP21 (P-GLYCOPROTEIN 21)O.I.H.G.S.X.
0.5178.90.88PtpAffx.207591.1.S1_x_atpmrna15065hypothetical protein-6e-2At4g13850GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)O.I.H.G.S.X.
0.4975.70.93PtpAffx.87677.1.S1_atCX182336hypothetical protein-8e-2At4g38470protein kinase family proteinO.I.H.G.S.X.
0.4875.40.93PtpAffx.22198.1.S1_atCK094234ABC transporter family protein /// multidrug/pheromone exporter, MDR family, ABC transporter family-7e-12At3g62150PGP21 (P-GLYCOPROTEIN 21)O.I.H.G.S.X.
0.4572.30.93PtpAffx.215318.1.S1_s_atpmrna29438hypothetical protein-1e+0At5g61660glycine-rich proteinO.I.H.G.S.X.
0.4572.30.88PtpAffx.207593.1.S1_atpmrna15069hypothetical protein-2e-2At4g13850GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)O.I.H.G.S.X.
0.4572.30.95PtpAffx.223705.1.S1_x_atpmrna41841multidrug/pheromone exporter, MDR family, ABC transporter family /// multidrug/pheromone exporter, MDR family, ABC transporter family-6e-45At1g02520PGP11 (P-GLYCOPROTEIN 11)O.I.H.G.S.X.
0.4167.70.90PtpAffx.156807.1.S1_atCX168731hypothetical protein-1e+0At3g12955auxin-responsive protein-relatedO.I.H.G.S.X.
0.3964.60.90PtpAffx.113686.1.S1_s_atCF230954hypothetical protein-3e-30At5g07270ankyrin repeat family proteinO.I.H.G.S.X.
0.3762.30.95PtpAffx.223705.1.S1_atpmrna41841multidrug/pheromone exporter, MDR family, ABC transporter family /// multidrug/pheromone exporter, MDR family, ABC transporter family-6e-45At1g02520PGP11 (P-GLYCOPROTEIN 11)O.I.H.G.S.X.
0.3762.30.93PtpAffx.90645.2.S1_atCX657409--1e+0At5g04750F1F0-ATPase inhibitor protein, putativeO.I.H.G.S.X.
0.3559.70.95PtpAffx.49251.1.A1_atCX175939hypothetical protein-4e-29At4g38470protein kinase family proteinO.I.H.G.S.X.
0.3458.30.90PtpAffx.148504.1.S1_atBU832827aminotransferase family protein-2e-9At5g53970aminotransferase, putativeO.I.H.G.S.X.
0.2543.60.92PtpAffx.99748.1.A1_atDN491439--5e-1At2g38905hydrophobic protein, putative / low temperature and salt responsive protein, putativeO.I.H.G.S.X.
0.1729.10.92PtpAffx.46700.1.S1_atCK097073--3e-5At3g19190-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.896.4GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.594.3GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.494.0GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.289.3GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.088.0GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.886.4GSM327358Populus balsamifera_20071015_Seedling_continuous_light_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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