CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.143501.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g31380: STH (HF=1e+0)

Module size 6 genes

NF 0.08

%ile 16.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.90 PtpAffx.143501.1.S1_at BU883274 hypothetical protein - 1e+0 At2g31380 STH O.I. H.G. S.X.
0.12 19.6 0.89 PtpAffx.55242.1.S1_at CV236376 beta-ketoacyl-coa synthase family protein - 8e-17 At2g26250 KCS10 (3-KETOACYL-COA SYNTHASE 10) O.I. H.G. S.X.
0.09 14.6 0.91 PtpAffx.208057.1.S1_at pmrna15992 hypothetical protein - 5e-2 At1g15000 scpl50 (serine carboxypeptidase-like 50) O.I. H.G. S.X.
0.08 12.9 0.90 PtpAffx.212195.1.S1_at pmrna23908 hypothetical protein - 1e-33 At5g16810 ATP binding / protein kinase O.I. H.G. S.X.
0.05 8.3 0.89 PtpAffx.8895.1.S1_at CV267481 hypothetical protein - 7e-1 At4g10596 unknown protein O.I. H.G. S.X.
0.05 8.3 0.89 PtpAffx.219605.1.S1_at pmrna35564 hypothetical protein - 2e-2 At1g58440 XF1 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.31	53.7	0.80	PtpAffx.220061.1.S1_at	pmrna36345	hypothetical protein	-	2e+0	At5g47150	YDG/SRA domain-containing protein	O.I.	H.G.	S.X.
0.29	50.5	0.82	PtpAffx.89340.3.A1_at	CV257711	-	-	3e+0	At4g37608	unknown protein	O.I.	H.G.	S.X.
0.23	40.5	0.87	PtpAffx.202605.1.S1_at	pmrna5213	hypothetical protein	-	1e-1	At5g50740	metal ion binding	O.I.	H.G.	S.X.
0.23	40.5	0.93	PtpAffx.80513.1.S1_at	CV277326	hypothetical protein	-	5e-8	At3g51550	FER (FERONIA)	O.I.	H.G.	S.X.
0.22	38.3	0.83	PtpAffx.74156.1.A1_at	BP934907	-	-	4e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.
0.21	36.5	0.84	PtpAffx.208227.1.S1_at	pmrna16371	ammonium transporter	-	2e-20	At1g64780	ATAMT1	O.I.	H.G.	S.X.
0.20	34.6	0.87	PtpAffx.8448.3.A1_a_at	CV265191	hypothetical protein	-	3e-39	At3g48560	CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1)	O.I.	H.G.	S.X.
0.16	26.9	0.85	PtpAffx.145206.1.A1_a_at	BP936911	-	-	3e-1	At3g23760	-	O.I.	H.G.	S.X.
0.15	25.3	0.91	PtpAffx.12232.1.A1_a_at	CV264320	hypothetical protein	-	1e-4	At3g17210	HS1 (HEAT STABLE PROTEIN 1)	O.I.	H.G.	S.X.
0.14	23.5	0.90	PtpAffx.49413.1.S1_at	CX178932	hypothetical protein	-	8e-2	At1g10657	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.9 97.4 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.7 97.3 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7 91.8 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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