CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.143501.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g31380: STH (HF=1e+0)

Module size 6 genes

NF 0.08

%ile 16.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.90 PtpAffx.143501.1.S1_at BU883274 hypothetical protein - 1e+0 At2g31380 STH O.I. H.G. S.X.
0.12 19.6 0.89 PtpAffx.55242.1.S1_at CV236376 beta-ketoacyl-coa synthase family protein - 8e-17 At2g26250 KCS10 (3-KETOACYL-COA SYNTHASE 10) O.I. H.G. S.X.
0.09 14.6 0.91 PtpAffx.208057.1.S1_at pmrna15992 hypothetical protein - 5e-2 At1g15000 scpl50 (serine carboxypeptidase-like 50) O.I. H.G. S.X.
0.08 12.9 0.90 PtpAffx.212195.1.S1_at pmrna23908 hypothetical protein - 1e-33 At5g16810 ATP binding / protein kinase O.I. H.G. S.X.
0.05 8.3 0.89 PtpAffx.8895.1.S1_at CV267481 hypothetical protein - 7e-1 At4g10596 unknown protein O.I. H.G. S.X.
0.05 8.3 0.89 PtpAffx.219605.1.S1_at pmrna35564 hypothetical protein - 2e-2 At1g58440 XF1 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.9 97.4 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.7 97.3 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7 91.8 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the maize gene, Zm.16117.1.S1_at, orthologous to the query gene, PtpAffx.143501.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 89.9 Zm.16117.1.S1_at At2g31380 - - 3e-1 At5g04200 AtMC9 (metacaspase 9) O.I. H.G. S.X.
0.67 85.8 Zm.17317.1.S1_at At2g31380 - - 2e+0 At5g28020 CYSD2 (CYSTEINE SYNTHASE D2) O.I. H.G. S.X.
0.67 85.8 Zm.6103.2.S1_at At2g31380 UBA and UBX domain-containing protein - 2e-1 At4g04210 PUX4 O.I. H.G. S.X.
0.63 81.1 Zm.7084.1.S1_at At2g31380 hypothetical protein LOC100216721 - 1e-2 At2g20760 protein binding / structural molecule O.I. H.G. S.X.
0.61 79.5 Zm.16513.7.A1_at At2g31380 hypothetical protein LOC100191561 - 0 At5g09810 ACT7 (ACTIN 7) O.I. H.G. S.X.
0.40 48.5 Zm.14507.1.A1_a_at At2g31380 glycosyl hydrolases family 16 protein - 1e-2 At1g11545 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera

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