CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.143501.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g31380: STH (HF=1e+0)

Module size 6 genes

NF 0.08

%ile 16.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.90 PtpAffx.143501.1.S1_at BU883274 hypothetical protein - 1e+0 At2g31380 STH O.I. H.G. S.X.
0.12 19.6 0.89 PtpAffx.55242.1.S1_at CV236376 beta-ketoacyl-coa synthase family protein - 8e-17 At2g26250 KCS10 (3-KETOACYL-COA SYNTHASE 10) O.I. H.G. S.X.
0.09 14.6 0.91 PtpAffx.208057.1.S1_at pmrna15992 hypothetical protein - 5e-2 At1g15000 scpl50 (serine carboxypeptidase-like 50) O.I. H.G. S.X.
0.08 12.9 0.90 PtpAffx.212195.1.S1_at pmrna23908 hypothetical protein - 1e-33 At5g16810 ATP binding / protein kinase O.I. H.G. S.X.
0.05 8.3 0.89 PtpAffx.8895.1.S1_at CV267481 hypothetical protein - 7e-1 At4g10596 unknown protein O.I. H.G. S.X.
0.05 8.3 0.89 PtpAffx.219605.1.S1_at pmrna35564 hypothetical protein - 2e-2 At1g58440 XF1 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.9 97.4 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.7 97.3 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7 91.8 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the grape gene, 1610171_at, orthologous to the query gene, PtpAffx.143501.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 1610171_at At2g31380 hypothetical protein LOC100263800 - 2e-2 At2g45100 RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding O.I. H.G. S.X.
0.07 7.8 1609877_at At2g31380 hypothetical protein LOC100264670 - 2e-28 At2g26460 RED family protein O.I. H.G. S.X.
0.05 6.0 1619150_at At2g31380 hypothetical protein LOC100264308 - 9e-55 At1g01040 DCL1 (DICER-LIKE 1) O.I. H.G. S.X.
0.04 5.2 1619089_at At2g31380 hypothetical protein LOC100257546 - 4e-23 At4g00840 zinc ion binding O.I. H.G. S.X.
0.02 3.2 1608726_at At2g31380 hypothetical protein LOC100258243 - 4e+0 At5g10620 - O.I. H.G. S.X.
0.02 3.2 1611056_at At2g31380 hypothetical protein LOC100251208 - 7e-3 At2g27760 ATIPT2 (TRNA ISOPENTENYLTRANSFERASE 2) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage