Co-expression analysis

Gene ID	PtpAffx.143501.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g31380: STH (HF=1e+0)
Module size	6 genes
NF	0.08
%ile	16.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.90	PtpAffx.143501.1.S1_at	BU883274	hypothetical protein	-	1e+0	At2g31380	STH	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.89	PtpAffx.55242.1.S1_at	CV236376	beta-ketoacyl-coa synthase family protein	-	8e-17	At2g26250	KCS10 (3-KETOACYL-COA SYNTHASE 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.91	PtpAffx.208057.1.S1_at	pmrna15992	hypothetical protein	-	5e-2	At1g15000	scpl50 (serine carboxypeptidase-like 50)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.90	PtpAffx.212195.1.S1_at	pmrna23908	hypothetical protein	-	1e-33	At5g16810	ATP binding / protein kinase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.89	PtpAffx.8895.1.S1_at	CV267481	hypothetical protein	-	7e-1	At4g10596	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.89	PtpAffx.219605.1.S1_at	pmrna35564	hypothetical protein	-	2e-2	At1g58440	XF1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	97.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.7	97.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the soybean gene, Gma.1895.1.A1_at, orthologous to the query gene, PtpAffx.143501.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	93.0	Gma.1895.1.A1_at	At2g31380	-	-	3e-1	At1g19970	ER lumen protein retaining receptor family protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.89654.1.A1_s_at	At2g31380	protein disulfide isomerase-like protein	-	3e-5	At1g77510	ATPDIL1-2 (PDI-LIKE 1-2)	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.6387.1.S1_at	At2g31380	-	-	3e-26	At4g24920	protein transport protein SEC61 gamma subunit, putative	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.385.1.S1_at	At2g31380	-	-	3e-3	At1g68090	ANN5	O.I.	H.G.	S.X.	Please select
0.21	26.6	Gma.4320.1.S1_s_at	At2g31380	-	-	3e-17	At2g45070	SEC61 BETA	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.2198.1.S1_at	At2g31380	-	-	6e-97	At1g14360	UTR3 (UDP-GALACTOSE TRANSPORTER 3)	O.I.	H.G.	S.X.	Please select
0.11	14.2	Gma.6427.3.S1_at	At2g31380	calnexin	-	3e-6	At5g07340	calnexin, putative	O.I.	H.G.	S.X.	Please select
0.10	13.0	Gma.2543.1.S1_at	At2g31380	-	-	7e-20	At1g80600	WIN1 (HOPW1-1-INTERACTING 1)	O.I.	H.G.	S.X.	Please select
0.09	12.0	GmaAffx.89126.1.S1_x_at	At2g31380	-	-	3e-1	At2g43510	ATTI1	O.I.	H.G.	S.X.	Please select
0.02	4.5	GmaAffx.92223.1.S1_at	At2g31380	-	-	5e-25	At5g41670	6-phosphogluconate dehydrogenase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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