CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.143501.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g31380: STH (HF=1e+0)

Module size 6 genes

NF 0.08

%ile 16.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.90 PtpAffx.143501.1.S1_at BU883274 hypothetical protein - 1e+0 At2g31380 STH O.I. H.G. S.X.
0.12 19.6 0.89 PtpAffx.55242.1.S1_at CV236376 beta-ketoacyl-coa synthase family protein - 8e-17 At2g26250 KCS10 (3-KETOACYL-COA SYNTHASE 10) O.I. H.G. S.X.
0.09 14.6 0.91 PtpAffx.208057.1.S1_at pmrna15992 hypothetical protein - 5e-2 At1g15000 scpl50 (serine carboxypeptidase-like 50) O.I. H.G. S.X.
0.08 12.9 0.90 PtpAffx.212195.1.S1_at pmrna23908 hypothetical protein - 1e-33 At5g16810 ATP binding / protein kinase O.I. H.G. S.X.
0.05 8.3 0.89 PtpAffx.8895.1.S1_at CV267481 hypothetical protein - 7e-1 At4g10596 unknown protein O.I. H.G. S.X.
0.05 8.3 0.89 PtpAffx.219605.1.S1_at pmrna35564 hypothetical protein - 2e-2 At1g58440 XF1 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.9 97.4 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.7 97.3 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7 91.8 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g31380, orthologous to the query gene, PtpAffx.143501.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.44 57.2 At2g31380 817696 STH a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction. O.I. H.G. S.X.
0.89 94.6 At3g12320 820411 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.75 86.9 At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. O.I. H.G. S.X.
0.73 85.5 At3g54500 824615 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. H.G. S.X.
0.60 75.7 At3g09600 820117 myb family transcription factor F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF O.I. H.G. S.X.
0.50 65.3 At5g06980 830589 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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