Co-expression analysis

Gene ID PtpAffx.143501.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g31380: STH (HF=1e+0)
Module size 6 genes
NF 0.08
%ile 16.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.90PtpAffx.143501.1.S1_atBU883274hypothetical protein-1e+0At2g31380STHO.I.H.G.S.X.
0.1219.60.89PtpAffx.55242.1.S1_atCV236376beta-ketoacyl-coa synthase family protein-8e-17At2g26250KCS10 (3-KETOACYL-COA SYNTHASE 10)O.I.H.G.S.X.
0.0914.60.91PtpAffx.208057.1.S1_atpmrna15992hypothetical protein-5e-2At1g15000scpl50 (serine carboxypeptidase-like 50)O.I.H.G.S.X.
0.0812.90.90PtpAffx.212195.1.S1_atpmrna23908hypothetical protein-1e-33At5g16810ATP binding / protein kinaseO.I.H.G.S.X.
0.058.30.89PtpAffx.8895.1.S1_atCV267481hypothetical protein-7e-1At4g10596unknown proteinO.I.H.G.S.X.
0.058.30.89PtpAffx.219605.1.S1_atpmrna35564hypothetical protein-2e-2At1g58440XF1O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.4GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.797.3GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.597.1GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.495.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.791.8GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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