Co-expression analysis

Gene ID PtpAffx.141654.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g38290: peptidyl-tRNA hydrolase family protein (HF=3e+0)
Module size 16 genes
NF 0.52
%ile 82.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7995.30.93PtpAffx.141654.1.S1_atAJ768599--3e+0At5g38290peptidyl-tRNA hydrolase family proteinO.I.H.G.S.X.
0.7794.90.94Ptp.2947.1.S1_atDN489526hypothetical protein-1e-1At4g24973-O.I.H.G.S.X.
0.7393.60.95PtpAffx.132098.1.A1_atDN490875hypothetical protein-2e-5At1g17220FUG1 (fu-gaeri1)O.I.H.G.S.X.
0.6791.10.94PtpAffx.105095.1.S1_atDN498748hypothetical protein-1e+0At5g05990mitochondrial glycoprotein family protein / MAM33 family proteinO.I.H.G.S.X.
0.5683.90.94Ptp.6138.1.S1_atCK094815--4e-1At1g53090SPA4 (SPA1-RELATED 4)O.I.H.G.S.X.
0.5380.50.95Ptp.1108.2.A1_atCK090142--9e-8At1g25440zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.4875.40.96PtpAffx.67441.1.S1_atDN498585hypothetical protein-3e-4At1g73110ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putativeO.I.H.G.S.X.
0.4875.40.93Ptp.2150.1.S1_atCK089522hypothetical protein-2e+0At4g09965unknown proteinO.I.H.G.S.X.
0.4875.40.94Ptp.1232.1.S1_atBI122968hypothetical protein-2e-19At1g49630ATPREP2 (ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2)O.I.H.G.S.X.
0.4673.70.94Ptp.6933.1.S1_atDN495918hypothetical protein-4e+0At5g46980invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.4572.30.94Ptp.7529.1.S1_atDN495630hypothetical protein-1e-45At3g28460unknown proteinO.I.H.G.S.X.
0.4471.90.95PtpAffx.20558.1.A1_atCV269561hypothetical protein-2e-17At5g64170dentin sialophosphoprotein-relatedO.I.H.G.S.X.
0.4369.70.94PtpAffx.26385.1.S1_atCK089971hypothetical protein-3e+0At1g59590ZCF37O.I.H.G.S.X.
0.4369.70.94Ptp.6241.1.S1_atDN500661hypothetical protein-3e-1At3g22300RPS10 (RIBOSOMAL PROTEIN S10)O.I.H.G.S.X.
0.4167.70.94PtpAffx.200858.1.S1_x_atpmrna1674hypothetical protein-4e-31At3g63520CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)O.I.H.G.S.X.
0.2950.50.94PtpAffx.135336.1.S1_atDN496303hypothetical protein-4e-3At3g57740protein kinase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.794.7GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.684.5GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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