CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.141519.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g64070: PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1) (HF=2e-120)

Module size 6 genes

NF 0.41

%ile 69.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 83.9 0.96 PtpAffx.141519.1.S1_at AJ774599 hypothetical protein - 2e-120 At5g64070 PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1) O.I. H.G. S.X.
0.61 87.0 0.96 Ptp.4771.1.S1_at BU893475 hypothetical protein - 1e-10 At4g19670 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.60 86.0 0.96 PtpAffx.215067.1.S1_at pmrna29028 hypothetical protein - 3e-5 At2g21120 unknown protein O.I. H.G. S.X.
0.30 52.0 0.96 PtpAffx.23095.1.S1_at CX177404 hypothetical protein - 1e-3 At3g02540 RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) O.I. H.G. S.X.
0.25 43.6 0.96 PtpAffx.84497.1.S1_s_at CF231611 hypothetical protein - 9e-17 At3g18140 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.25 43.6 0.96 PtpAffx.93043.1.S1_at CX178086 hypothetical protein - 4e-4 At1g29800 phosphoinositide binding / zinc ion binding O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.56	83.9	0.96	PtpAffx.141519.1.S1_at	AJ774599	hypothetical protein	-	2e-120	At5g64070	PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1)	O.I.	H.G.	S.X.
0.61	87.0	0.96	Ptp.4771.1.S1_at	BU893475	hypothetical protein	-	1e-10	At4g19670	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.60	86.0	0.96	PtpAffx.215067.1.S1_at	pmrna29028	hypothetical protein	-	3e-5	At2g21120	unknown protein	O.I.	H.G.	S.X.
0.30	52.0	0.96	PtpAffx.23095.1.S1_at	CX177404	hypothetical protein	-	1e-3	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	O.I.	H.G.	S.X.
0.25	43.6	0.96	PtpAffx.84497.1.S1_s_at	CF231611	hypothetical protein	-	9e-17	At3g18140	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.25	43.6	0.96	PtpAffx.93043.1.S1_at	CX178086	hypothetical protein	-	4e-4	At1g29800	phosphoinositide binding / zinc ion binding	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	91.1	0.96	PtpAffx.210955.1.S1_at	pmrna21524	-	-	7e-20	At3g05040	HST (HASTY)	O.I.	H.G.	S.X.
0.50	78.6	0.93	PtpAffx.112006.1.S1_at	CK102245	hypothetical protein	-	2e-1	At4g24220	VEP1 (VEIN PATTERNING 1)	O.I.	H.G.	S.X.
0.50	78.6	0.94	PtpAffx.222783.1.S1_s_at	pmrna40432	hypothetical protein	-	2e+0	At5g52960	unknown protein	O.I.	H.G.	S.X.
0.50	78.6	0.95	PtpAffx.204523.1.S1_at	pmrna8873	hypothetical protein	-	8e-39	At2g16920	UBC23 (UBIQUITIN-CONJUGATING ENZYME 23)	O.I.	H.G.	S.X.
0.50	78.6	0.95	Ptp.5238.1.S1_s_at	BU887108	hypothetical protein	-	5e-28	At1g53400	unknown protein	O.I.	H.G.	S.X.
0.50	78.6	0.96	PtpAffx.213102.1.S1_s_at	pmrna25639	hypothetical protein	-	3e-60	At1g63700	YDA (YODA)	O.I.	H.G.	S.X.
0.50	78.6	0.96	PtpAffx.217501.1.S1_s_at	pmrna32788	hypothetical protein	-	8e-7	At1g22540	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.
0.47	74.6	0.94	PtpAffx.73020.1.S1_at	CX169841	hypothetical protein	-	9e-14	At4g20850	TPP2 (TRIPEPTIDYL PEPTIDASE II)	O.I.	H.G.	S.X.
0.46	73.7	0.96	PtpAffx.149909.1.S1_s_at	AJ773011	hypothetical protein	-	3e-141	At2g13560	malate oxidoreductase, putative	O.I.	H.G.	S.X.
0.44	71.9	0.94	PtpAffx.207012.1.S1_at	pmrna13889	hypothetical protein	-	4e-7	At3g21175	ZML1 (ZIM-LIKE 1)	O.I.	H.G.	S.X.
0.44	71.9	0.95	PtpAffx.135771.1.S1_at	CK103553	hypothetical protein	-	5e-12	At1g31120	KUP10	O.I.	H.G.	S.X.
0.44	71.9	0.95	PtpAffx.79359.1.S1_s_at	CK106811	hypothetical protein	-	3e-1	At4g00500	lipase class 3 family protein / calmodulin-binding heat-shock protein-related	O.I.	H.G.	S.X.
0.43	69.7	0.96	PtpAffx.159110.1.S1_at	CX170606	hypothetical protein	-	2e-30	At1g04140	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.42	68.6	0.95	PtpAffx.215878.1.S1_s_at	pmrna30326	global transcription factor group /// global transcription factor group	-	4e-35	At4g10710	SPT16 (global transcription factor C)	O.I.	H.G.	S.X.
0.40	67.0	0.93	PtpAffx.118991.2.S1_at	CV254223	hypothetical protein	-	2e-5	At5g48610	unknown protein	O.I.	H.G.	S.X.
0.40	67.0	0.95	PtpAffx.212734.1.S1_s_at	pmrna24907	hypothetical protein	-	2e-16	At3g47890	ubiquitin thiolesterase/ zinc ion binding	O.I.	H.G.	S.X.
0.40	67.0	0.95	PtpAffx.71505.1.A1_at	CK091850	hypothetical protein	-	2e+0	At1g50870	F-box family protein	O.I.	H.G.	S.X.
0.37	62.3	0.93	PtpAffx.140976.1.A1_s_at	CV237432	hypothetical protein	-	2e+0	At3g06840	unknown protein	O.I.	H.G.	S.X.
0.36	61.6	0.95	PtpAffx.139026.1.S1_s_at	CK091782	hypothetical protein	-	1e-4	At3g17250	protein phosphatase 2C-related / PP2C-related	O.I.	H.G.	S.X.
0.36	61.6	0.96	PtpAffx.108604.1.A1_at	CV233919	hypothetical protein	-	9e-18	At5g15170	tyrosyl-DNA phosphodiesterase-related	O.I.	H.G.	S.X.
0.36	61.6	0.96	PtpAffx.24293.2.A1_at	AJ769717	hypothetical protein	-	3e-15	At1g54830	NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3)	O.I.	H.G.	S.X.
0.36	61.6	0.96	PtpAffx.158805.1.S1_at	BU869437	hypothetical protein	-	5e-25	At4g25970	PSD3 (phosphatidylserine decarboxylase 3)	O.I.	H.G.	S.X.
0.35	59.7	0.94	PtpAffx.66898.1.S1_at	CK101820	hypothetical protein	-	2e-15	At5g58510	unknown protein	O.I.	H.G.	S.X.
0.35	59.7	0.94	PtpAffx.214406.1.S1_at	pmrna28022	-	-	6e-19	At4g25770	unknown protein	O.I.	H.G.	S.X.
0.35	59.7	0.95	PtpAffx.135361.1.S1_s_at	CN519617	hypothetical protein	-	3e-8	At5g16270	SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4)	O.I.	H.G.	S.X.
0.35	59.7	0.93	PtpAffx.12287.1.S1_s_at	CV232901	hypothetical protein	-	3e-7	At1g22550	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.
0.35	59.7	0.94	PtpAffx.161969.1.A1_at	CV241120	hypothetical protein	-	6e-7	At2g41900	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.
0.33	57.5	0.94	PtpAffx.216904.1.S1_at	pmrna31967	hypothetical protein	-	2e-116	At5g38880	unknown protein	O.I.	H.G.	S.X.
0.33	57.5	0.95	PtpAffx.201749.1.S1_s_at	pmrna3479	NPR1/NIM1-like regulatory protein	-	1e-3	At5g45110	NPR3 (NPR1-LIKE PROTEIN 3)	O.I.	H.G.	S.X.
0.33	57.5	0.95	PtpAffx.209359.1.S1_s_at	pmrna18533	hypothetical protein	-	0	At3g55200	splicing factor, putative	O.I.	H.G.	S.X.
0.33	57.5	0.95	PtpAffx.124545.1.S1_s_at	DN499401	hypothetical protein	-	4e-26	At2g43180	catalytic	O.I.	H.G.	S.X.
0.33	57.5	0.96	PtpAffx.157124.1.S1_at	CK106225	hypothetical protein	-	3e-11	At5g51340	unknown protein	O.I.	H.G.	S.X.
0.32	55.2	0.94	PtpAffx.221350.1.S1_at	pmrna38193	hypothetical protein	-	4e-8	At4g10070	KH domain-containing protein	O.I.	H.G.	S.X.
0.32	55.2	0.95	Ptp.2256.1.S1_s_at	CK088908	hypothetical protein	-	3e-15	At1g05570	CALS1 (CALLOSE SYNTHASE 1)	O.I.	H.G.	S.X.
0.31	53.7	0.94	PtpAffx.137124.1.S1_s_at	BU878372	hypothetical protein	-	3e-23	At3g48820	glycosyl transferase family 29 protein / sialyltransferase family protein	O.I.	H.G.	S.X.
0.31	53.7	0.94	PtpAffx.85649.1.S1_at	BU836231	-	-	7e-27	At4g17050	UGLYAH (UREIDOGLYCINE AMINOHYDROLASE)	O.I.	H.G.	S.X.
0.31	53.7	0.95	PtpAffx.118931.1.S1_at	BU879785	hypothetical protein	-	9e-2	At4g00231	MEE50 (maternal effect embryo arrest 50)	O.I.	H.G.	S.X.
0.31	53.7	0.95	PtpAffx.31300.1.S1_at	CV240962	hypothetical protein	-	2e-36	At5g06140	SNX1 (SORTING NEXIN 1)	O.I.	H.G.	S.X.
0.31	53.7	0.96	PtpAffx.161360.1.S1_at	CN524282	hypothetical protein	-	1e-1	Atmg00270	-	O.I.	H.G.	S.X.
0.30	52.0	0.93	PtpAffx.209355.1.S1_at	pmrna18523	hypothetical protein	-	5e-36	At3g55270	MKP1 (MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1)	O.I.	H.G.	S.X.
0.30	52.0	0.96	PtpAffx.150645.1.S1_at	AJ778728	hypothetical protein	-	2e-15	At1g75420	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.
0.30	52.0	0.93	PtpAffx.42535.1.A1_at	CV242365	-	-	9e-40	At2g04880	ZAP1 (ZINC-DEPENDENT ACTIVATOR PROTEIN-1)	O.I.	H.G.	S.X.
0.29	50.5	0.95	PtpAffx.23175.1.S1_at	CF233190	-	-	5e-13	At5g43060	cysteine proteinase, putative / thiol protease, putative	O.I.	H.G.	S.X.
0.29	50.5	0.95	PtpAffx.118751.1.S1_at	CX174734	hypothetical protein	-	3e-45	At2g27600	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	O.I.	H.G.	S.X.
0.29	50.5	0.95	PtpAffx.3207.1.S1_a_at	CV244358	hypothetical protein	-	6e-12	At1g29810	dehydratase family	O.I.	H.G.	S.X.
0.29	50.5	0.95	PtpAffx.150651.1.S1_at	BU820333	hypothetical protein	-	9e-17	At1g04950	TAF6 (TBP-ASSOCIATED FACTOR 6)	O.I.	H.G.	S.X.
0.29	50.5	0.96	PtpAffx.205864.1.S1_s_at	pmrna11626	hypothetical protein	-	3e-114	At4g35230	BSK1 (BR-SIGNALING KINASE 1)	O.I.	H.G.	S.X.
0.29	50.5	0.97	Ptp.4562.1.S1_s_at	CV261348	hypothetical protein	-	1e-20	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	O.I.	H.G.	S.X.
0.28	50.5	0.94	PtpAffx.2708.2.S1_s_at	CX168369	hypothetical protein	-	1e-29	At2g46560	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.27	47.1	0.95	Ptp.5643.1.S1_s_at	CV240561	hypothetical protein	-	4e-29	At1g48420	D-CDES (D-CYSTEINE DESULFHYDRASE)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.5 97.1 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.2 95.6 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0 88.0 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
5.5	97.1	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0	88.0	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	PtpAffx.141519.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g64070: PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1) (HF=2e-120)
Module size	6 genes
NF	0.41
%ile	69.6

Co-expression analysis

Gene ID PtpAffx.141519.1.S1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At5g64070: PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1) (HF=2e-120) Module size 6 genes NF 0.41 %ile 69.6

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.141519.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g64070: PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1) (HF=2e-120)

Module size 6 genes

NF 0.41

%ile 69.6

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays