Co-expression analysis

Gene ID	PtpAffx.141519.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g64070: PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1) (HF=2e-120)
Module size	6 genes
NF	0.41
%ile	69.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	0.96	PtpAffx.141519.1.S1_at	AJ774599	hypothetical protein	-	2e-120	At5g64070	PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.96	Ptp.4771.1.S1_at	BU893475	hypothetical protein	-	1e-10	At4g19670	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.96	PtpAffx.215067.1.S1_at	pmrna29028	hypothetical protein	-	3e-5	At2g21120	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.96	PtpAffx.23095.1.S1_at	CX177404	hypothetical protein	-	1e-3	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.96	PtpAffx.84497.1.S1_s_at	CF231611	hypothetical protein	-	9e-17	At3g18140	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.96	PtpAffx.93043.1.S1_at	CX178086	hypothetical protein	-	4e-4	At1g29800	phosphoinositide binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	97.1	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0	88.0	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the grape gene, 1614137_at, orthologous to the query gene, PtpAffx.141519.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	91.5	1614137_at	At5g64070	-	-	1e-16	At1g58200	MSL3 (MscS-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.57	79.8	1618515_s_at	At5g64070	hypothetical protein LOC100254426	-	9e-24	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	O.I.	H.G.	S.X.	Please select
0.56	79.4	1619873_at	At5g64070	hypothetical protein LOC100264420	-	2e-9	At5g42250	alcohol dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.55	77.3	1614430_at	At5g64070	hypothetical protein LOC100255931	-	1e-3	At5g57060	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	75.7	1622321_at	At5g64070	hypothetical protein LOC100257583	-	8e-12	At2g07640	D2,D4-dienoyl-CoA reductase-related	O.I.	H.G.	S.X.	Please select
0.52	73.9	1622596_s_at	At5g64070	hypothetical protein LOC100255931	-	1e-3	At5g57060	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	69.3	1615832_at	At5g64070	hypothetical protein LOC100242360	-	1e-10	At2g24860	chaperone protein dnaJ-related	O.I.	H.G.	S.X.	Please select
0.48	68.8	1621682_s_at	At5g64070	pyruvate decarboxylase 1	-	5e-52	At5g54960	PDC2 (pyruvate decarboxylase-2)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1608145_at	At5g64070	hypothetical protein LOC100249147	-	9e-33	At2g23420	NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1610300_at	At5g64070	-	-	9e-7	At3g23200	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	64.6	1621853_at	At5g64070	hypothetical protein LOC100262402	-	1e+0	At1g77520	O-methyltransferase family 2 protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1609766_at	At5g64070	hypothetical protein LOC100255070	-	4e+0	At5g22850	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	1611322_at	At5g64070	pyruvate decarboxylase 1	-	2e-15	At5g54960	PDC2 (pyruvate decarboxylase-2)	O.I.	H.G.	S.X.	Please select
0.41	58.7	1608169_at	At5g64070	hypothetical protein LOC100244143	-	3e-14	At5g03905	hesB-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	1612330_at	At5g64070	hypothetical protein LOC100242653	-	2e-8	At1g71750	phosphoribosyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	1608292_at	At5g64070	hypothetical protein LOC100241035	-	7e-30	At5g57690	diacylglycerol kinase	O.I.	H.G.	S.X.	Please select
0.39	54.9	1615660_at	At5g64070	similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase	-	1e-51	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	O.I.	H.G.	S.X.	Please select
0.39	54.9	1618259_at	At5g64070	hypothetical LOC100245758	-	3e-32	At5g65780	ATBCAT-5	O.I.	H.G.	S.X.	Please select
0.32	43.1	1621703_at	At5g64070	hypothetical protein LOC100247388	-	5e-1	At4g20370	TSF (TWIN SISTER OF FT)	O.I.	H.G.	S.X.	Please select
0.31	41.3	1617149_at	At5g64070	-	-	2e-2	At1g09645	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	1617736_a_at	At5g64070	hypothetical protein LOC100240929	-	6e-1	At3g05500	rubber elongation factor (REF) family protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	1617324_at	At5g64070	hypothetical protein LOC100248010	-	3e-2	At1g80360	aminotransferase class I and II family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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