Co-expression analysis

Gene ID	PtpAffx.141519.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g64070: PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1) (HF=2e-120)
Module size	6 genes
NF	0.41
%ile	69.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	0.96	PtpAffx.141519.1.S1_at	AJ774599	hypothetical protein	-	2e-120	At5g64070	PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.96	Ptp.4771.1.S1_at	BU893475	hypothetical protein	-	1e-10	At4g19670	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.96	PtpAffx.215067.1.S1_at	pmrna29028	hypothetical protein	-	3e-5	At2g21120	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.96	PtpAffx.23095.1.S1_at	CX177404	hypothetical protein	-	1e-3	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.96	PtpAffx.84497.1.S1_s_at	CF231611	hypothetical protein	-	9e-17	At3g18140	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.96	PtpAffx.93043.1.S1_at	CX178086	hypothetical protein	-	4e-4	At1g29800	phosphoinositide binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	97.1	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0	88.0	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.7564.2.S1_at, orthologous to the query gene, PtpAffx.141519.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.68	86.4	GmaAffx.7564.2.S1_at	At5g64070	-	-	2e-126	At5g64070	PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1)	O.I.	H.G.	S.X.	Please select
0.56	78.2	GmaAffx.46711.1.S1_at	At5g64070	-	-	4e+0	At4g25560	AtMYB18 (myb domain protein 18)	O.I.	H.G.	S.X.	Please select
0.52	73.1	Gma.10051.2.S1_at	At5g64070	-	-	2e-9	At4g11790	Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	67.7	Gma.1353.2.S1_at	At5g64070	-	-	1e-47	At4g26100	CK1 (CASEIN KINASE 1)	O.I.	H.G.	S.X.	Please select
0.48	67.7	Gma.3839.1.S1_at	At5g64070	-	-	2e-69	At1g60780	HAP13 (HAPLESS 13)	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.3736.1.S1_at	At5g64070	-	-	1e-10	At3g52120	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.3836.1.S1_at	At5g64070	-	-	1e-26	At4g23460	beta-adaptin, putative	O.I.	H.G.	S.X.	Please select
0.42	59.3	Gma.5527.2.S1_at	At5g64070	-	-	3e-16	At5g62600	transportin-SR-related	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.85246.2.S1_at	At5g64070	-	-	2e-9	At5g14250	COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13)	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.5720.1.S1_s_at	At5g64070	-	-	4e-5	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.78964.1.S1_at	At5g64070	-	-	1e-3	At3g52660	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.7065.1.S1_at	At5g64070	-	-	1e-7	At1g54080	oligouridylate-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.34	47.2	Gma.8227.2.S1_a_at	At5g64070	-	-	5e-28	At2g26590	adhesion regulating molecule family	O.I.	H.G.	S.X.	Please select
0.34	47.2	Gma.6104.2.S1_a_at	At5g64070	-	-	3e-20	At5g63260	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.86122.1.S1_at	At5g64070	-	-	6e-19	At3g51310	VPS35C (VPS35 HOMOLOG C)	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.90987.1.S1_at	At5g64070	-	-	1e+0	At5g64750	ABR1 (ABA REPRESSOR1)	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.15387.1.S1_s_at	At5g64070	-	-	8e-55	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select
0.25	32.6	GmaAffx.89525.1.S1_s_at	At5g64070	-	-	3e-26	At2g39840	TOPP4	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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