Co-expression analysis

Gene ID PtpAffx.141421.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g20280: ATSPS1F (sucrose phosphate synthase 1F) (HF=1e-158)
Module size 7 genes
NF 0.65
%ile 93.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8697.40.94PtpAffx.141421.1.S1_atDN500621hypothetical protein-1e-158At5g20280ATSPS1F (sucrose phosphate synthase 1F)O.I.H.G.S.X.
0.7393.60.95PtpAffx.37792.1.A1_atCV239289hypothetical protein-2e-18At5g20280ATSPS1F (sucrose phosphate synthase 1F)O.I.H.G.S.X.
0.7393.60.95PtpAffx.141421.1.S1_s_atDN500621hypothetical protein-1e-158At5g20280ATSPS1F (sucrose phosphate synthase 1F)O.I.H.G.S.X.
0.6791.10.95PtpAffx.81253.1.S1_atCX184422hypothetical protein-3e-7At4g04460aspartyl protease family proteinO.I.H.G.S.X.
0.5784.20.94PtpAffx.206816.1.S1_atpmrna13533hypothetical protein-1e+0At5g25220KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3)O.I.H.G.S.X.
0.4369.70.94Ptp.5632.3.S1_atCA933999--3e-67At5g60360AALP (Arabidopsis aleurain-like protease)O.I.H.G.S.X.
0.3559.70.94PtpAffx.152352.1.S1_s_atCN523321hypothetical protein-9e-49At4g37550formamidase, putative / formamide amidohydrolase, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.095.3GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.694.5GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.293.5GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.992.5GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.691.3GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.188.6GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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