Co-expression analysis

Gene ID	PtpAffx.140097.1.A1_a_at
Gene name	arogenate/prephenate dehydratase
Homology with Arabidopsis	Similar to At1g11790: ADT1 (arogenate dehydratase 1) (HF=5e-13)
Module size	6 genes
NF	0.32
%ile	56.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.92	PtpAffx.140097.1.A1_a_at	CV272774	arogenate/prephenate dehydratase	-	5e-13	At1g11790	ADT1 (arogenate dehydratase 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	PtpAffx.7456.1.S1_s_at	CK318652	2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase	-	2e-79	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.92	PtpAffx.6463.1.S1_at	CV235875	arogenate/prephenate dehydratase	-	9e-40	At2g27820	PD1 (PREPHENATE DEHYDRATASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.94	Ptp.2560.1.S1_s_at	CV270621	hypothetical protein	-	1e-65	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.93	Ptp.2560.3.S1_s_at	CK092469	hypothetical protein	-	2e-27	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.93	Ptp.6462.1.S1_s_at	CF232785	3-phosphoshikimate 1-carboxyvinyltransferase	-	1e-63	At1g48860	3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	94.3	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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