Co-expression analysis

Gene ID	PtpAffx.139109.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g03640: BGLU25 (BETA GLUCOSIDASE 25) (HF=5e-3)
Module size	6 genes
NF	0.70
%ile	96.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.90	PtpAffx.139109.1.S1_s_at	CX168297	hypothetical protein	-	5e-3	At3g03640	BGLU25 (BETA GLUCOSIDASE 25)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.86	Ptp.5965.1.S1_at	CX169141	hypothetical protein	-	2e-4	At3g60120	BGLU27 (BETA GLUCOSIDASE 27)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.88	PtpAffx.34388.1.A1_at	BP932598	hypothetical protein	-	1e+0	At5g42965	nucleic acid binding / ribonuclease H	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.91	Ptp.5965.1.S1_s_at	CX169141	hypothetical protein	-	2e-4	At3g60120	BGLU27 (BETA GLUCOSIDASE 27)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.88	Ptp.2750.1.S1_s_at	BU825949	hypothetical protein	-	1e-3	At4g36470	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.87	Ptp.5519.1.S1_s_at	BU824008	hypothetical protein	-	5e+0	At5g15830	AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	98.1	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9	87.2	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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