Co-expression analysis

Gene ID	PtpAffx.138813.1.A1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g09430: ACLA-3 (HF=3e-104)
Module size	6 genes
NF	0.40
%ile	68.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	73.7	0.94	PtpAffx.138813.1.A1_s_at	CV254613	hypothetical protein	-	3e-104	At1g09430	ACLA-3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.96	Ptp.5413.1.S1_s_at	CV270307	methylenetetrahydrofolate reductase	-	2e-28	At2g44160	MTHFR2 (METHYLENETETRAHYDROFOLATE REDUCTASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.96	PtpAffx.21035.2.S1_a_at	CV259320	hypothetical protein	-	1e-96	At5g10840	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.96	Ptp.6276.1.S1_at	CV275961	hypothetical protein	-	1e-4	At3g44340	CEF (clone eighty-four)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.96	PtpAffx.2315.1.S1_at	CV258368	hypothetical protein	-	9e-31	At4g12650	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.96	PtpAffx.159811.1.A1_s_at	CV258337	-	-	2e-1	At1g07140	SIRANBP	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.8	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage