Co-expression analysis

Gene ID PtpAffx.138414.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g18270: CYP77A5P (HF=6e-9)
Module size 6 genes
NF 0.44
%ile 72.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6388.10.96PtpAffx.138414.1.S1_atCX657512hypothetical protein-6e-9At3g18270CYP77A5PO.I.H.G.S.X.
0.7393.60.97PtpAffx.29091.1.S1_atDN487081hypothetical protein-4e+0At5g49334unknown proteinO.I.H.G.S.X.
0.4369.70.97Ptp.2443.1.A1_atCK093677hypothetical protein-1e+0At1g72630ELF4-L2 (ELF4-Like 2)O.I.H.G.S.X.
0.4067.00.98Ptp.7636.1.S1_atDN487977hypothetical protein-1e-82At5g01230FtsJ-like methyltransferase family proteinO.I.H.G.S.X.
0.3052.00.97PtpAffx.3601.2.S1_atCX653935hypothetical protein-2e+0At5g52930unknown proteinO.I.H.G.S.X.
0.1830.80.97Ptp.1845.1.A1_s_atCV256202hypothetical protein-4e-47At1g30580GTP bindingO.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.998.7GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
7.098.0GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.694.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.193.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.791.8GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

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