Co-expression analysis

Gene ID	PtpAffx.138414.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g18270: CYP77A5P (HF=6e-9)
Module size	6 genes
NF	0.44
%ile	72.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.96	PtpAffx.138414.1.S1_at	CX657512	hypothetical protein	-	6e-9	At3g18270	CYP77A5P	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.97	PtpAffx.29091.1.S1_at	DN487081	hypothetical protein	-	4e+0	At5g49334	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.97	Ptp.2443.1.A1_at	CK093677	hypothetical protein	-	1e+0	At1g72630	ELF4-L2 (ELF4-Like 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.98	Ptp.7636.1.S1_at	DN487977	hypothetical protein	-	1e-82	At5g01230	FtsJ-like methyltransferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.97	PtpAffx.3601.2.S1_at	CX653935	hypothetical protein	-	2e+0	At5g52930	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.97	Ptp.1845.1.A1_s_at	CV256202	hypothetical protein	-	4e-47	At1g30580	GTP binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	98.7	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.0	98.0	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1	93.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7	91.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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