Co-expression analysis

Gene ID	PtpAffx.13792.2.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g10610: CID12 (HF=7e-14)
Module size	6 genes
NF	0.46
%ile	76.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.95	PtpAffx.13792.2.S1_at	CV283738	hypothetical protein	-	7e-14	At4g10610	CID12	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	PtpAffx.11623.1.A1_at	CV260515	hypothetical protein	-	8e-25	At5g09850	transcription elongation factor-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.95	PtpAffx.20260.2.S1_a_at	CV257316	hypothetical protein	-	1e-3	At4g22190	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.94	PtpAffx.214482.1.S1_at	pmrna28166	hypothetical protein	-	4e-21	At4g31000	calmodulin-binding protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.94	PtpAffx.32386.1.A1_a_at	CV245577	hypothetical protein	-	8e-3	At1g01780	LIM domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.95	Ptp.3673.1.S1_s_at	CK096543	hypothetical protein	-	6e-1	At4g00355	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.5	97.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage