Co-expression analysis

Gene ID PtpAffx.13757.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g40550: ETG1 (E2F TARGET GENE 1) (HF=1e-9)
Module size 10 genes
NF 0.12
%ile 24.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5683.90.90PtpAffx.13757.1.A1_atCK093352hypothetical protein-1e-9At2g40550ETG1 (E2F TARGET GENE 1)O.I.H.G.S.X.
0.2950.50.94Ptp.2067.1.S1_atCV256476--9e-15At1g74520ATHVA22AO.I.H.G.S.X.
0.2136.50.93PtpAffx.20278.2.A1_s_atCV244932hypothetical protein-3e-20At4g28950ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9)O.I.H.G.S.X.
0.1830.80.93PtpAffx.44495.1.A1_s_atCV230381--3e+0At1g57730zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1626.90.92PtpAffx.97116.1.S1_atCK099593hypothetical protein-1e-13At3g28690protein kinase, putativeO.I.H.G.S.X.
0.1626.90.93PtpAffx.31826.1.A1_atCV269217hypothetical protein-1e-7At4g32730PC-MYB1O.I.H.G.S.X.
0.0914.60.92Ptp.5261.1.S1_s_atCV271086hypothetical protein-3e-43At1g76090SMT3 (STEROL METHYLTRANSFERASE 3)O.I.H.G.S.X.
0.0812.90.91Ptp.1313.1.S1_atCK092935hypothetical protein-4e-51At3g06860MFP2 (MULTIFUNCTIONAL PROTEIN 2)O.I.H.G.S.X.
0.0812.90.92PtpAffx.93089.1.S1_atDN499088hypothetical protein-1e-3At1g17090unknown proteinO.I.H.G.S.X.
0.058.30.91PtpAffx.105648.1.S1_s_atCK103674hypothetical protein-1e-27At4g31490coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.897.4GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.791.8GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.188.6GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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