Co-expression analysis

Gene ID	PtpAffx.136498.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g52260: ATPDIL1-5 (PDI-LIKE 1-5) (HF=6e-3)
Module size	11 genes
NF	0.41
%ile	69.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	88.4	0.95	PtpAffx.136498.1.S1_at	CF230021	hypothetical protein	-	6e-3	At1g52260	ATPDIL1-5 (PDI-LIKE 1-5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.96	PtpAffx.148399.1.S1_at	CF234711	hypothetical protein	-	2e-2	At3g25545	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.95	PtpAffx.200972.1.S1_x_at	pmrna1900	hypothetical protein	-	4e-9	At5g40490	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.96	Ptp.4561.1.S1_s_at	BU826272	hypothetical protein	-	6e-9	At1g71860	PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	PtpAffx.102441.1.S1_s_at	CV131778	-	-	1e+0	At5g55610	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	Ptp.4606.1.S1_at	BP922769	hypothetical protein	-	1e-40	At4g28390	AAC3 (ADP/ATP CARRIER 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	PtpAffx.249.468.A1_at	CF119463	hypothetical protein	-	3e-97	At1g56410	ERD2 (EARLY-RESPONSIVE TO DEHYDRATION 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	PtpAffx.22.2.S1_at	CV256577	hypothetical protein	-	6e-12	At3g08550	KOB1 (KOBITO)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.96	PtpAffx.218860.1.S1_at	pmrna34602	hypothetical protein	-	1e-6	At1g64880	ribosomal protein S5 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.96	PtpAffx.91803.1.S1_at	DN500898	hypothetical protein	-	2e-18	At4g36195	serine carboxypeptidase S28 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.96	PtpAffx.150547.1.S1_at	CN521037	hypothetical protein	-	1e-22	At5g16150	PGLCT (PLASTIDIC GLC TRANSLOCATOR)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
1.9	87.2	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.6	84.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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