Co-expression analysis

Gene ID PtpAffx.136498.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g52260: ATPDIL1-5 (PDI-LIKE 1-5) (HF=6e-3)
Module size 11 genes
NF 0.41
%ile 69.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6488.40.95PtpAffx.136498.1.S1_atCF230021hypothetical protein-6e-3At1g52260ATPDIL1-5 (PDI-LIKE 1-5)O.I.H.G.S.X.
0.5582.20.96PtpAffx.148399.1.S1_atCF234711hypothetical protein-2e-2At3g25545unknown proteinO.I.H.G.S.X.
0.4875.40.95PtpAffx.200972.1.S1_x_atpmrna1900hypothetical protein-4e-9At5g40490RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.4774.60.96Ptp.4561.1.S1_s_atBU826272hypothetical protein-6e-9At1g71860PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)O.I.H.G.S.X.
0.4471.90.96PtpAffx.102441.1.S1_s_atCV131778--1e+0At5g55610unknown proteinO.I.H.G.S.X.
0.4067.00.96Ptp.4606.1.S1_atBP922769hypothetical protein-1e-40At4g28390AAC3 (ADP/ATP CARRIER 3)O.I.H.G.S.X.
0.3661.60.95PtpAffx.249.468.A1_atCF119463hypothetical protein-3e-97At1g56410ERD2 (EARLY-RESPONSIVE TO DEHYDRATION 2)O.I.H.G.S.X.
0.3661.60.95PtpAffx.22.2.S1_atCV256577hypothetical protein-6e-12At3g08550KOB1 (KOBITO)O.I.H.G.S.X.
0.2850.50.96PtpAffx.218860.1.S1_atpmrna34602hypothetical protein-1e-6At1g64880ribosomal protein S5 family proteinO.I.H.G.S.X.
0.2543.60.96PtpAffx.91803.1.S1_atDN500898hypothetical protein-2e-18At4g36195serine carboxypeptidase S28 family proteinO.I.H.G.S.X.
0.2543.60.96PtpAffx.150547.1.S1_atCN521037hypothetical protein-1e-22At5g16150PGLCT (PLASTIDIC GLC TRANSLOCATOR)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
1.987.2GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.684.5GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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