Co-expression analysis

Gene ID PtpAffx.135882.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g78420: protein binding / zinc ion binding (HF=1e-7)
Module size 6 genes
NF 0.49
%ile 80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.96PtpAffx.135882.1.A1_atCV281275hypothetical protein-1e-7At1g78420protein binding / zinc ion bindingO.I.H.G.S.X.
0.8096.00.96Ptp.7787.1.S1_s_atDN499212--4e+0At2g05642-O.I.H.G.S.X.
0.4673.70.96Ptp.2558.1.S1_atCK096344hypothetical protein-0At1g78900VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)O.I.H.G.S.X.
0.3559.70.96Ptp.5593.1.S1_atDN495608hypothetical protein-7e-15At4g26240unknown proteinO.I.H.G.S.X.
0.3357.50.96PtpAffx.12253.1.A1_atCV225881hypothetical protein-3e+0At4g32960unknown proteinO.I.H.G.S.X.
0.2950.50.96PtpAffx.121458.1.A1_s_atCV239175hypothetical protein-3e-14At3g20650mRNA capping enzyme family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6086.00.94PtpAffx.18657.1.S1_atCV239198--9e-2At4g18140phosphataseO.I.H.G.S.X.
0.6086.00.95PtpAffx.67630.1.A1_atDN491193hypothetical protein-3e-4At3g02410-O.I.H.G.S.X.
0.5582.20.95Ptp.51.1.A1_atCV257322hypothetical protein-3e-9At5g12310zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5582.20.95PtpAffx.68799.1.S1_atBU822076hypothetical protein-1e+0At3g61980serine protease inhibitor, Kazal-type family proteinO.I.H.G.S.X.
0.5078.60.95PtpAffx.11535.6.S1_atCX178705hypothetical protein-2e+0At5g28630glycine-rich proteinO.I.H.G.S.X.
0.5078.60.96PtpAffx.203319.1.S1_s_atpmrna6599hypothetical protein-4e-43At1g64630WNK10 (WITH NO LYSINE KINASE 10)O.I.H.G.S.X.
0.4875.40.95PtpAffx.17764.1.A1_atCV262921Cl-channel clc-7-2e-30At5g26240CLC-D (CHLORIDE CHANNEL D)O.I.H.G.S.X.
0.4875.40.96PtpAffx.15375.1.S1_atCV232670--5e-20At3g53000AtPP2-A15 (Phloem protein 2-A15)O.I.H.G.S.X.
0.4471.90.92Ptp.3956.1.S1_atBU861989--2e+0At3g42160pectinesterase-relatedO.I.H.G.S.X.
0.4471.90.97Ptp.2672.1.A1_atCV254014hypothetical protein-1e-67At1g51590mannosyl-oligosaccharide 1,2-alpha-mannosidase, putativeO.I.H.G.S.X.
0.4369.70.96PtpAffx.25116.1.A1_atCV228813hypothetical protein-2e-8At3g54130josephin family proteinO.I.H.G.S.X.
0.4067.00.93PtpAffx.75547.1.A1_atCV266178hypothetical protein-8e+0At4g16360AMP-activated protein kinaseO.I.H.G.S.X.
0.4067.00.95PtpAffx.200764.1.S1_s_atpmrna1480hypothetical protein-1e-36At5g59210myosin heavy chain-relatedO.I.H.G.S.X.
0.4067.00.95PtpAffx.212839.1.S1_atpmrna25131hypothetical protein-1e-1At5g63280zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.3863.70.94Ptp.1557.2.S1_s_atBI120353--1e-3At4g17730SYP23 (SYNTAXIN OF PLANTS 23)O.I.H.G.S.X.
0.3661.60.93PtpAffx.210652.1.S1_s_atpmrna20892hypothetical protein-2e-15At4g24900unknown proteinO.I.H.G.S.X.
0.3661.60.93PtpAffx.211715.1.S1_atpmrna22956hypothetical protein-2e-10At1g56460PAPA-1-like family protein / zinc finger (HIT type) family proteinO.I.H.G.S.X.
0.3661.60.94Ptp.4565.1.S1_atCX172398hypothetical protein-5e-6At5g04280glycine-rich RNA-binding proteinO.I.H.G.S.X.
0.3661.60.94PtpAffx.210637.1.S1_atpmrna20865hypothetical protein-1e-17At2g40190glycosyl transferase family 1 proteinO.I.H.G.S.X.
0.3357.50.90PtpAffx.212029.1.S1_atpmrna23618--4e-1At5g43880unknown proteinO.I.H.G.S.X.
0.3357.50.93PtpAffx.201626.1.S1_atpmrna3217hypothetical protein-4e-50At2g21410VHA-A2 (VACUOLAR PROTON ATPASE A2)O.I.H.G.S.X.
0.3357.50.95PtpAffx.202581.1.S1_s_atpmrna5173hypothetical protein-3e+0At5g16430-O.I.H.G.S.X.
0.3357.50.95PtpAffx.79839.1.S1_s_atCX654659hypothetical protein-1e-34At3g10200dehydration-responsive protein-relatedO.I.H.G.S.X.
0.3357.50.95PtpAffx.91626.1.S1_atDN486285hypothetical protein-2e-30At1g26470-O.I.H.G.S.X.
0.3255.20.93PtpAffx.48890.1.A1_atCX655572auxin efflux carrier component, auxin transport protein-1e-25At5g01990auxin efflux carrier family proteinO.I.H.G.S.X.
0.3153.70.95PtpAffx.208938.1.S1_s_atpmrna17713hypothetical protein-9e-158At1g68370ARG1 (ALTERED RESPONSE TO GRAVITY 1)O.I.H.G.S.X.
0.3153.70.95PtpAffx.67146.1.S1_s_atBI120910hypothetical protein-1e-30At1g07510ftsh10 (FtsH protease 10)O.I.H.G.S.X.
0.3153.70.95Ptp.4662.1.S1_s_atCK093014hypothetical protein-5e-13At4g15420PRLI-interacting factor KO.I.H.G.S.X.
0.3153.70.95Ptp.6150.1.S1_s_atBU869632hypothetical protein-3e-16At4g13520SMAP1 (SMALL ACIDIC PROTEIN 1)O.I.H.G.S.X.
0.3153.70.96PtpAffx.89130.1.A1_atCV270804hypothetical protein-3e-1At5g23290PDF5 (PREFOLDIN 5)O.I.H.G.S.X.
0.3052.00.95PtpAffx.2043.1.S1_a_atCV243667hypothetical protein-1e-17At2g01930BPC1 (BASIC PENTACYSTEINE1)O.I.H.G.S.X.
0.2950.50.96PtpAffx.37010.2.A1_atCV281749hypothetical protein-5e-34At1g72710CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)O.I.H.G.S.X.
0.2950.50.96PtpAffx.72180.1.S1_s_atAI162185hypothetical protein-4e-13At3g51040RTH (RTE1-HOMOLOG)O.I.H.G.S.X.
0.2950.50.96Ptp.1943.1.S1_atCV254446hypothetical protein-5e-4At5g43280ATDCI1 (DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1)O.I.H.G.S.X.
0.2747.10.92PtpAffx.45149.1.S1_atDN491536hypothetical protein-5e-22At1g37150HCS2 (holocarboxylase synthetase 2)O.I.H.G.S.X.
0.2747.10.94PtpAffx.216616.1.S1_s_atpmrna31519hypothetical protein-6e+0At2g02240MEE66 (maternal effect embryo arrest 66)O.I.H.G.S.X.
0.2747.10.94PtpAffx.70613.1.S1_atAJ769236hypothetical protein-5e-28At2g16710hesB-like domain-containing proteinO.I.H.G.S.X.
0.2747.10.94PtpAffx.213002.1.S1_atpmrna25425--2e-28At4g19900glycosyl transferase-relatedO.I.H.G.S.X.
0.2747.10.95PtpAffx.202780.1.S1_s_atpmrna5529hypothetical protein-4e-9At1g58110bZIP family transcription factorO.I.H.G.S.X.
0.2747.10.95PtpAffx.221172.1.S1_atpmrna37834hypothetical protein-3e-51At5g42870lipin family proteinO.I.H.G.S.X.
0.2645.20.94PtpAffx.210056.1.S1_s_atpmrna19812hypothetical protein-1e-20At5g54860integral membrane transporter family proteinO.I.H.G.S.X.
0.2645.20.94PtpAffx.135.1.S1_a_atDN486180hypothetical protein-4e-5At5g61500ATG3O.I.H.G.S.X.
0.2543.60.92PtpAffx.208584.1.S1_atpmrna17031hypothetical protein-4e-1At5g60030unknown proteinO.I.H.G.S.X.
0.2543.60.93PtpAffx.11476.1.S1_atCV264485hypothetical protein-2e-31At2g39800P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1)O.I.H.G.S.X.
0.2543.60.94Ptp.2171.1.S1_a_atCV227774hypothetical protein-3e-32At3g12560TRFL9 (TRF-LIKE 9)O.I.H.G.S.X.
0.2543.60.95Ptp.31.2.S1_s_atCV252955hypothetical protein-2e-5At4g29340PRF4 (PROFILIN 4)O.I.H.G.S.X.
0.2543.60.96Ptp.2854.1.A1_atCV257270hypothetical protein-4e-1At4g32090galactosyltransferaseO.I.H.G.S.X.
0.2543.60.96PtpAffx.43623.2.A1_a_atCV227115hypothetical protein-7e-5At3g03610phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.
0.2543.60.96Ptp.4866.1.S1_atCK111784--9e-105At5g44240haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.2543.60.96PtpAffx.28339.1.S1_atCV264979hypothetical protein-1e-29At4g38790ER lumen protein retaining receptor family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.096.6GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.995.1GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.794.7GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.785.5GSM328063Populus x canescens leaf control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.684.5GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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