Co-expression analysis

Gene ID	PtpAffx.135882.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g78420: protein binding / zinc ion binding (HF=1e-7)
Module size	6 genes
NF	0.49
%ile	80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.96	PtpAffx.135882.1.A1_at	CV281275	hypothetical protein	-	1e-7	At1g78420	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.96	Ptp.7787.1.S1_s_at	DN499212	-	-	4e+0	At2g05642	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.96	Ptp.2558.1.S1_at	CK096344	hypothetical protein	-	0	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.96	Ptp.5593.1.S1_at	DN495608	hypothetical protein	-	7e-15	At4g26240	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.96	PtpAffx.12253.1.A1_at	CV225881	hypothetical protein	-	3e+0	At4g32960	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.96	PtpAffx.121458.1.A1_s_at	CV239175	hypothetical protein	-	3e-14	At3g20650	mRNA capping enzyme family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	96.6	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.6	84.5	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, Ta.6439.3.A1_a_at, orthologous to the query gene, PtpAffx.135882.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	Ta.6439.3.A1_a_at	At1g78420	-	-	4e+0	At4g11870	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.5500.2.S1_a_at	At1g78420	-	-	4e+0	At3g53870	40S ribosomal protein S3 (RPS3B)	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.11560.3.S1_at	At1g78420	-	-	2e-5	At4g31410	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	TaAffx.19824.2.S1_s_at	At1g78420	-	-	1e-9	At4g27020	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	TaAffx.19824.1.S1_at	At1g78420	-	-	6e-20	At1g70160	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.2187.1.S1_at	At1g78420	-	-	4e-2	At3g47300	SELT (SELT-LIKE PROTEIN PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.28765.2.S1_at	At1g78420	-	-	8e+0	At5g38420	ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B)	O.I.	H.G.	S.X.	Please select
0.35	49.8	TaAffx.50947.1.S1_at	At1g78420	-	-	2e-5	At1g71020	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.6327.1.S1_at	At1g78420	-	-	1e-2	At5g61530	small G protein family protein / RhoGAP family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.5500.1.S1_x_at	At1g78420	-	-	1e-1	At1g06500	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.4968.3.S1_a_at	At1g78420	-	-	5e-6	At1g21450	SCL1 (SCARECROW-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.27	35.6	TaAffx.31573.1.S1_at	At1g78420	-	-	5e-12	At2g40810	AtATG18c	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.25425.2.S1_a_at	At1g78420	-	-	4e-5	At4g08930	ATAPRL6 (APR-like 6)	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.6327.3.S1_a_at	At1g78420	-	-	1e+0	At3g01440	oxygen evolving enhancer 3 (PsbQ) family protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.12066.1.S1_s_at	At1g78420	-	-	5e-6	At4g24160	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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