Co-expression analysis

Gene ID	PtpAffx.135882.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g78420: protein binding / zinc ion binding (HF=1e-7)
Module size	6 genes
NF	0.49
%ile	80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.96	PtpAffx.135882.1.A1_at	CV281275	hypothetical protein	-	1e-7	At1g78420	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.96	Ptp.7787.1.S1_s_at	DN499212	-	-	4e+0	At2g05642	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.96	Ptp.2558.1.S1_at	CK096344	hypothetical protein	-	0	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.96	Ptp.5593.1.S1_at	DN495608	hypothetical protein	-	7e-15	At4g26240	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.96	PtpAffx.12253.1.A1_at	CV225881	hypothetical protein	-	3e+0	At4g32960	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.96	PtpAffx.121458.1.A1_s_at	CV239175	hypothetical protein	-	3e-14	At3g20650	mRNA capping enzyme family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	96.6	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.6	84.5	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the barley gene, HM11M18r_at, orthologous to the query gene, PtpAffx.135882.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	HM11M18r_at	At1g78420	-	-	9e-1	At2g27160	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	HD08L09r_at	At1g78420	-	-	4e+0	At2g40085	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	Contig12012_at	At1g78420	-	-	1e+0	At1g31040	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	HB04I10r_x_at	At1g78420	-	-	5e+0	At5g56230	PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2)	O.I.	H.G.	S.X.	Please select
0.61	78.7	HF09N12r_at	At1g78420	-	-	1e-1	At5g39330	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig25644_at	At1g78420	-	-	4e+0	At4g19003	VPS25	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage