Co-expression analysis

Gene ID	PtpAffx.135882.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g78420: protein binding / zinc ion binding (HF=1e-7)
Module size	6 genes
NF	0.49
%ile	80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.96	PtpAffx.135882.1.A1_at	CV281275	hypothetical protein	-	1e-7	At1g78420	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.96	Ptp.7787.1.S1_s_at	DN499212	-	-	4e+0	At2g05642	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.96	Ptp.2558.1.S1_at	CK096344	hypothetical protein	-	0	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.96	Ptp.5593.1.S1_at	DN495608	hypothetical protein	-	7e-15	At4g26240	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.96	PtpAffx.12253.1.A1_at	CV225881	hypothetical protein	-	3e+0	At4g32960	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.96	PtpAffx.121458.1.A1_s_at	CV239175	hypothetical protein	-	3e-14	At3g20650	mRNA capping enzyme family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	96.6	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.6	84.5	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the soybean gene, Gma.8275.1.S1_at, orthologous to the query gene, PtpAffx.135882.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	Gma.8275.1.S1_at	At1g78420	-	-	4e-7	At1g78420	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.59	79.5	GmaAffx.24756.1.S1_at	At1g78420	-	-	5e-1	At1g68510	LBD42 (LOB DOMAIN-CONTAINING PROTEIN 42)	O.I.	H.G.	S.X.	Please select
0.52	73.1	Gma.8818.1.A1_s_at	At1g78420	-	-	7e-1	At5g47160	YDG/SRA domain-containing protein	O.I.	H.G.	S.X.	Please select
0.51	72.3	Gma.12059.1.S1_at	At1g78420	-	-	2e+0	At4g01430	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	Gma.6975.2.S1_a_at	At1g78420	-	-	4e-1	At4g35930	-	O.I.	H.G.	S.X.	Please select
0.45	63.9	Gma.7858.1.A1_at	At1g78420	-	-	5e-3	At1g04230	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	63.9	Gma.9716.1.A1_at	At1g78420	-	-	3e-5	At5g38600	proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.31236.1.A1_at	At1g78420	-	-	3e+0	At3g26460	major latex protein-related / MLP-related	O.I.	H.G.	S.X.	Please select
0.42	59.3	GmaAffx.2122.1.S1_at	At1g78420	-	-	5e-1	At3g21215	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.42	59.3	Gma.4959.1.A1_s_at	At1g78420	-	-	9e-1	At1g26310	CAL (CAULIFLOWER)	O.I.	H.G.	S.X.	Please select
0.42	59.3	Gma.7733.1.S1_at	At1g78420	-	-	3e-7	At3g55070	-	O.I.	H.G.	S.X.	Please select
0.41	58.1	GmaAffx.7291.1.S1_at	At1g78420	-	-	8e+0	At2g40640	-	O.I.	H.G.	S.X.	Please select
0.41	58.1	Gma.8288.2.A1_at	At1g78420	-	-	4e+0	At3g21390	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.18743.1.S1_at	At1g78420	-	-	4e-1	At5g26770	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.65218.1.A1_at	At1g78420	-	-	9e-1	At3g02230	RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1)	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.24357.1.A1_at	At1g78420	-	-	3e-4	At3g26935	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.9567.1.S1_at	At1g78420	-	-	1e+0	At5g06870	PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.39	54.5	GmaAffx.15226.1.S1_at	At1g78420	-	-	2e+0	At5g40620	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.4288.1.S1_at	At1g78420	-	-	3e+0	At1g34790	TT1 (transparent testa 1)	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.10829.1.S1_at	At1g78420	-	-	1e-4	At2g28360	-	O.I.	H.G.	S.X.	Please select
0.38	53.3	GmaAffx.11747.3.A1_at	At1g78420	-	-	4e+0	At2g39310	JAL22 (JACALIN-RELATED LECTIN 22)	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.43038.1.S1_at	At1g78420	-	-	2e+0	At5g48030	GFA2 (GAMETOPHYTIC FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.14735.1.S1_at	At1g78420	-	-	5e-3	At3g29270	ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.2835.1.S1_at	At1g78420	-	-	4e-40	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.8062.1.A1_at	At1g78420	-	-	1e-7	At2g21630	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.15579.1.S1_at	At1g78420	-	-	4e-1	At2g39500	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	Gma.3861.1.S1_at	At1g78420	-	-	3e-4	At1g75850	VPS35B (VPS35 HOMOLOG B)	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.93192.1.S1_s_at	At1g78420	-	-	5e+0	At5g63087	-	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.16364.1.S1_at	At1g78420	-	-	2e+0	At4g19570	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.3724.1.S1_at	At1g78420	-	-	2e+0	At3g56580	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	GmaAffx.72036.1.A1_at	At1g78420	-	-	4e+0	At4g18395	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.9	Gma.1602.1.S1_a_at	At1g78420	-	-	2e-171	At3g50000	CKA2 (CASEIN KINASE II, ALPHA CHAIN 2)	O.I.	H.G.	S.X.	Please select
0.23	29.9	GmaAffx.78614.1.S1_at	At1g78420	-	-	4e+0	At1g77020	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	Gma.8087.1.S1_at	At1g78420	-	-	2e-1	At3g44150	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	GmaAffx.29508.1.A1_at	At1g78420	-	-	6e-2	At1g55340	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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