Co-expression analysis

Gene ID PtpAffx.135825.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g46180: UTR5 (UDP-GALACTOSE TRANSPORTER 5) (HF=8e-34)
Module size 6 genes
NF 0.56
%ile 86.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.96PtpAffx.135825.1.S1_atCF936294hypothetical protein-8e-34At3g46180UTR5 (UDP-GALACTOSE TRANSPORTER 5)O.I.H.G.S.X.
0.5078.60.96PtpAffx.131812.1.S1_atDN501570hypothetical protein-3e-4At3g25910zinc ion bindingO.I.H.G.S.X.
0.5078.60.96Ptp.2014.1.S1_s_atCV258759hypothetical protein-2e-50At4g29490aminopeptidase/ manganese ion bindingO.I.H.G.S.X.
0.4369.70.96Ptp.3469.1.S1_s_atCK100709hypothetical protein-3e-24At5g18640lipase class 3 family proteinO.I.H.G.S.X.
0.4067.00.96Ptp.3625.1.A1_atCV267089hypothetical protein-2e-12At3g07560PEX13 (PEROXIN 13)O.I.H.G.S.X.
0.3661.60.96PtpAffx.99107.3.A1_s_atCV240653hypothetical protein-6e-64At4g19640ARA7O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.696.2GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.295.6GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.995.1GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.691.3GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.088.0GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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