Co-expression analysis

Gene ID	PtpAffx.135690.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g18940: cyclic phosphodiesterase, putative (HF=1e+0)
Module size	8 genes
NF	0.09
%ile	18.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	93.8	0.85	PtpAffx.135690.1.S1_at	CK105850	hypothetical protein	-	1e+0	At4g18940	cyclic phosphodiesterase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.86	PtpAffx.212442.1.S1_at	pmrna24380	hypothetical protein	-	6e-1	At1g75350	emb2184 (embryo defective 2184)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.87	PtpAffx.121094.1.A1_at	CV254794	-	-	8e-1	At5g41390	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.87	PtpAffx.9143.2.A1_at	CV241187	hypothetical protein	-	1e-1	At4g30820	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.86	PtpAffx.211820.1.S1_at	pmrna23192	hypothetical protein	-	2e-42	At2g42700	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.88	PtpAffx.26642.2.A1_a_at	CV250411	hypothetical protein	-	1e+0	At2g28420	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.86	PtpAffx.204770.1.S1_at	pmrna9393	hypothetical protein	-	1e-1	At3g52070	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.86	PtpAffx.208767.1.S1_at	pmrna17380	hypothetical protein	-	1e+0	At5g26610	D111/G-patch domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage