Co-expression analysis

Gene ID PtpAffx.135514.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g07910: leucine-rich repeat family protein (HF=1e-7)
Module size 6 genes
NF 0.40
%ile 67.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6086.00.95PtpAffx.135514.1.S1_atDN498152hypothetical protein-1e-7At5g07910leucine-rich repeat family proteinO.I.H.G.S.X.
0.5582.20.95PtpAffx.93050.1.S1_atDN500932hypothetical protein-1e-7At3g48070protein binding / zinc ion bindingO.I.H.G.S.X.
0.4369.70.95Ptp.5383.1.S1_atAJ768686hypothetical protein-1e-32At5g22000RHF2A (RING-H2 GROUP F2A)O.I.H.G.S.X.
0.4067.00.95PtpAffx.217198.1.S1_atpmrna32362--1e-99At5g22950VPS24.1O.I.H.G.S.X.
0.4067.00.95PtpAffx.158765.2.S1_s_atCF118958hypothetical protein-8e-35At3g52950CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinO.I.H.G.S.X.
0.2441.80.95PtpAffx.1404.2.A1_a_atCV225922hypothetical protein-6e-5At3g24315AtSec20O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.092.9GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.16513.11.A1_a_at, orthologous to the query gene, PtpAffx.135514.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.0Zm.16513.11.A1_a_atAt5g07910hypothetical protein LOC100217303-3e+0At1g01230ORMDL family proteinO.I.H.G.S.X.
0.6785.8Zm.4628.1.A1_atAt5g07910hypothetical protein LOC100272450-2e-2At4g33400dem protein-related / defective embryo and meristems protein-relatedO.I.H.G.S.X.
0.5571.6Zm.4373.1.S1_atAt5g07910fertilization independent endosperm1-2e-5At3g20740FIE (FERTILIZATION-INDEPENDENT ENDOSPERM)O.I.H.G.S.X.
0.5369.1Zm.3721.1.S1_atAt5g07910--1e-2At3g28430unknown proteinO.I.H.G.S.X.
0.5065.7Zm.7872.1.S1_atAt5g07910TBC1 domain family member 22A-2e-9At2g30710RabGAP/TBC domain-containing proteinO.I.H.G.S.X.
0.3336.0Zm.9169.2.S1_x_atAt5g07910hypothetical protein LOC100194136-9e-10At2g47970NPL4 family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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