Co-expression analysis

Gene ID	PtpAffx.135514.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g07910: leucine-rich repeat family protein (HF=1e-7)
Module size	6 genes
NF	0.40
%ile	67.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.95	PtpAffx.135514.1.S1_at	DN498152	hypothetical protein	-	1e-7	At5g07910	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.95	PtpAffx.93050.1.S1_at	DN500932	hypothetical protein	-	1e-7	At3g48070	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.95	Ptp.5383.1.S1_at	AJ768686	hypothetical protein	-	1e-32	At5g22000	RHF2A (RING-H2 GROUP F2A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.95	PtpAffx.217198.1.S1_at	pmrna32362	-	-	1e-99	At5g22950	VPS24.1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.95	PtpAffx.158765.2.S1_s_at	CF118958	hypothetical protein	-	8e-35	At3g52950	CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.95	PtpAffx.1404.2.A1_a_at	CV225922	hypothetical protein	-	6e-5	At3g24315	AtSec20	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	92.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the grape gene, 1618654_at, orthologous to the query gene, PtpAffx.135514.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1618654_at	At5g07910	hypothetical protein LOC100259649	-	9e-1	At4g04614	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	1622561_at	At5g07910	hypothetical protein LOC100264847	-	6e+0	Atmg00620	-	O.I.	H.G.	S.X.	Please select
0.57	79.8	1621138_at	At5g07910	-	-	2e+1	At5g29000	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.56	79.4	1619789_at	At5g07910	hypothetical protein LOC100244542	-	4e+0	At2g26040	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	1607019_at	At5g07910	hypothetical protein LOC100251940	-	3e+0	At2g41420	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1621815_at	At5g07910	hypothetical protein LOC100261110	-	1e+0	At1g12630	DNA binding / transcription activator/ transcription factor	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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