Co-expression analysis

Gene ID PtpAffx.135514.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g07910: leucine-rich repeat family protein (HF=1e-7)
Module size 6 genes
NF 0.40
%ile 67.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6086.00.95PtpAffx.135514.1.S1_atDN498152hypothetical protein-1e-7At5g07910leucine-rich repeat family proteinO.I.H.G.S.X.
0.5582.20.95PtpAffx.93050.1.S1_atDN500932hypothetical protein-1e-7At3g48070protein binding / zinc ion bindingO.I.H.G.S.X.
0.4369.70.95Ptp.5383.1.S1_atAJ768686hypothetical protein-1e-32At5g22000RHF2A (RING-H2 GROUP F2A)O.I.H.G.S.X.
0.4067.00.95PtpAffx.217198.1.S1_atpmrna32362--1e-99At5g22950VPS24.1O.I.H.G.S.X.
0.4067.00.95PtpAffx.158765.2.S1_s_atCF118958hypothetical protein-8e-35At3g52950CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinO.I.H.G.S.X.
0.2441.80.95PtpAffx.1404.2.A1_a_atCV225922hypothetical protein-6e-5At3g24315AtSec20O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.092.9GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.71484.1.S1_at, orthologous to the query gene, PtpAffx.135514.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9298.9GmaAffx.71484.1.S1_atAt5g07910--3e-7At5g07910leucine-rich repeat family proteinO.I.H.G.S.X.
0.7489.2GmaAffx.92182.1.S1_s_atAt5g07910--9e-1At1g69800CBS domain-containing proteinO.I.H.G.S.X.
0.6282.1GmaAffx.40660.2.S1_atAt5g07910--2e-1At5g48680sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.5878.8GmaAffx.92886.1.S1_s_atAt5g07910--3e-41At5g09900EMB2107 (EMBRYO DEFECTIVE 2107)O.I.H.G.S.X.
0.5778.8Gma.10588.1.S1_a_atAt5g07910--2e-2At1g10720BSD domain-containing proteinO.I.H.G.S.X.
0.5374.2GmaAffx.38743.1.S1_atAt5g07910--4e-4At5g23340-O.I.H.G.S.X.
0.5273.1GmaAffx.8285.2.S1_s_atAt5g07910--7e-11At4g10140unknown proteinO.I.H.G.S.X.
0.5071.7Gma.8009.2.S1_atAt5g07910--5e-31At2g38610KH domain-containing proteinO.I.H.G.S.X.
0.4968.3GmaAffx.58155.1.S1_atAt5g07910--2e-36At4g32150ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711)O.I.H.G.S.X.
0.4968.3GmaAffx.70783.1.S1_atAt5g07910sodium/proton antiporter-2e-17At5g27150NHX1 (NA+/H+ EXCHANGER)O.I.H.G.S.X.
0.4766.6GmaAffx.90266.1.S1_s_atAt5g07910--8e-20At5g64760RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)O.I.H.G.S.X.
0.4665.5Gma.1760.3.S1_atAt5g07910--5e-1At2g36295unknown proteinO.I.H.G.S.X.
0.4563.9GmaAffx.55210.1.S1_atAt5g07910--5e-1At1g08650PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)O.I.H.G.S.X.
0.4563.9GmaAffx.79142.1.S1_atAt5g07910--6e-6At4g35140transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.4463.3GmaAffx.12516.1.S1_atAt5g07910--3e-4At3g58460ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15)O.I.H.G.S.X.
0.4463.3Gma.7528.2.S1_atAt5g07910--3e-49At4g16143IMPA-2 (IMPORTIN ALPHA ISOFORM 2)O.I.H.G.S.X.
0.4360.6GmaAffx.29121.1.S1_atAt5g07910--1e+0At4g17310unknown proteinO.I.H.G.S.X.
0.4360.6GmaAffx.77370.1.S1_atAt5g07910--8e-5At1g05500NTMC2T2.1O.I.H.G.S.X.
0.4360.6GmaAffx.58610.1.S1_atAt5g07910--1e-2At3g49430SRp34a (Ser/Arg-rich protein 34a)O.I.H.G.S.X.
0.4158.1GmaAffx.86611.1.S1_atAt5g07910--2e-34At5g02800protein kinase family proteinO.I.H.G.S.X.
0.4057.1GmaAffx.90152.1.S1_s_atAt5g07910guanine nucleotide regulatory protein-8e-144At4g17170RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)O.I.H.G.S.X.
0.4057.1Gma.10798.2.S1_a_atAt5g07910--1e-43At1g10430PP2A-2O.I.H.G.S.X.
0.3853.3GmaAffx.90621.1.S1_s_atAt5g07910--4e-50At2g21270ubiquitin fusion degradation UFD1 family proteinO.I.H.G.S.X.
0.3751.7GmaAffx.90994.1.S1_s_atAt5g07910--7e-12At4g11410short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.3548.6Gma.4412.2.S1_a_atAt5g07910TATA-box binding protein-3e-6At3g13445TBP1 (TATA BINDING PROTEIN 1)O.I.H.G.S.X.
0.3346.1Gma.13243.1.S1_atAt5g07910--8e-5At1g16240SYP51 (SYNTAXIN OF PLANTS 51)O.I.H.G.S.X.
0.3346.1GmaAffx.40660.1.S1_atAt5g07910--5e-3At5g25540CID6 (CTC-Interacting Domain 6)O.I.H.G.S.X.
0.3346.1Gma.4166.1.S1_s_atAt5g07910--2e-5At3g12740ALIS1 (ALA-INTERACTING SUBUNIT 1)O.I.H.G.S.X.
0.3346.1GmaAffx.90426.1.S1_s_atAt5g07910urease accessory protein UreF-7e-7At1g21840UREF (urease accessory protein F)O.I.H.G.S.X.
0.3243.7GmaAffx.91113.1.S1_s_atAt5g07910--1e-31At4g23460beta-adaptin, putativeO.I.H.G.S.X.
0.3243.7Gma.5720.2.S1_a_atAt5g07910--2e-5At1g51200zinc finger (AN1-like) family proteinO.I.H.G.S.X.
0.3243.7Gma.11267.3.S1_a_atAt5g07910--1e-7At2g28370-O.I.H.G.S.X.
0.3243.7Gma.5720.3.S1_s_atAt5g07910--2e-5At1g51200zinc finger (AN1-like) family proteinO.I.H.G.S.X.
0.3142.2Gma.3757.2.S1_a_atAt5g07910--8e-35At3g46460UBC13 (ubiquitin-conjugating enzyme 13)O.I.H.G.S.X.
0.3040.4GmaAffx.88360.1.S1_atAt5g07910--1e-7At1g71980protease-associated zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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