Co-expression analysis

Gene ID	PtpAffx.135514.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g07910: leucine-rich repeat family protein (HF=1e-7)
Module size	6 genes
NF	0.40
%ile	67.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.95	PtpAffx.135514.1.S1_at	DN498152	hypothetical protein	-	1e-7	At5g07910	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.95	PtpAffx.93050.1.S1_at	DN500932	hypothetical protein	-	1e-7	At3g48070	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.95	Ptp.5383.1.S1_at	AJ768686	hypothetical protein	-	1e-32	At5g22000	RHF2A (RING-H2 GROUP F2A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.95	PtpAffx.217198.1.S1_at	pmrna32362	-	-	1e-99	At5g22950	VPS24.1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.95	PtpAffx.158765.2.S1_s_at	CF118958	hypothetical protein	-	8e-35	At3g52950	CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.95	PtpAffx.1404.2.A1_a_at	CV225922	hypothetical protein	-	6e-5	At3g24315	AtSec20	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	92.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.71484.1.S1_at, orthologous to the query gene, PtpAffx.135514.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.9	GmaAffx.71484.1.S1_at	At5g07910	-	-	3e-7	At5g07910	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.74	89.2	GmaAffx.92182.1.S1_s_at	At5g07910	-	-	9e-1	At1g69800	CBS domain-containing protein	O.I.	H.G.	S.X.	Please select
0.62	82.1	GmaAffx.40660.2.S1_at	At5g07910	-	-	2e-1	At5g48680	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.58	78.8	GmaAffx.92886.1.S1_s_at	At5g07910	-	-	3e-41	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	O.I.	H.G.	S.X.	Please select
0.57	78.8	Gma.10588.1.S1_a_at	At5g07910	-	-	2e-2	At1g10720	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	GmaAffx.38743.1.S1_at	At5g07910	-	-	4e-4	At5g23340	-	O.I.	H.G.	S.X.	Please select
0.52	73.1	GmaAffx.8285.2.S1_s_at	At5g07910	-	-	7e-11	At4g10140	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.8009.2.S1_at	At5g07910	-	-	5e-31	At2g38610	KH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.49	68.3	GmaAffx.58155.1.S1_at	At5g07910	-	-	2e-36	At4g32150	ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711)	O.I.	H.G.	S.X.	Please select
0.49	68.3	GmaAffx.70783.1.S1_at	At5g07910	sodium/proton antiporter	-	2e-17	At5g27150	NHX1 (NA+/H+ EXCHANGER)	O.I.	H.G.	S.X.	Please select
0.47	66.6	GmaAffx.90266.1.S1_s_at	At5g07910	-	-	8e-20	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	O.I.	H.G.	S.X.	Please select
0.46	65.5	Gma.1760.3.S1_at	At5g07910	-	-	5e-1	At2g36295	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	63.9	GmaAffx.55210.1.S1_at	At5g07910	-	-	5e-1	At1g08650	PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)	O.I.	H.G.	S.X.	Please select
0.45	63.9	GmaAffx.79142.1.S1_at	At5g07910	-	-	6e-6	At4g35140	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	GmaAffx.12516.1.S1_at	At5g07910	-	-	3e-4	At3g58460	ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15)	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.7528.2.S1_at	At5g07910	-	-	3e-49	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.29121.1.S1_at	At5g07910	-	-	1e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.77370.1.S1_at	At5g07910	-	-	8e-5	At1g05500	NTMC2T2.1	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.58610.1.S1_at	At5g07910	-	-	1e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.	Please select
0.41	58.1	GmaAffx.86611.1.S1_at	At5g07910	-	-	2e-34	At5g02800	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.90152.1.S1_s_at	At5g07910	guanine nucleotide regulatory protein	-	8e-144	At4g17170	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.10798.2.S1_a_at	At5g07910	-	-	1e-43	At1g10430	PP2A-2	O.I.	H.G.	S.X.	Please select
0.38	53.3	GmaAffx.90621.1.S1_s_at	At5g07910	-	-	4e-50	At2g21270	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.90994.1.S1_s_at	At5g07910	-	-	7e-12	At4g11410	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.4412.2.S1_a_at	At5g07910	TATA-box binding protein	-	3e-6	At3g13445	TBP1 (TATA BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.13243.1.S1_at	At5g07910	-	-	8e-5	At1g16240	SYP51 (SYNTAXIN OF PLANTS 51)	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.40660.1.S1_at	At5g07910	-	-	5e-3	At5g25540	CID6 (CTC-Interacting Domain 6)	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.4166.1.S1_s_at	At5g07910	-	-	2e-5	At3g12740	ALIS1 (ALA-INTERACTING SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.90426.1.S1_s_at	At5g07910	urease accessory protein UreF	-	7e-7	At1g21840	UREF (urease accessory protein F)	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.91113.1.S1_s_at	At5g07910	-	-	1e-31	At4g23460	beta-adaptin, putative	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.5720.2.S1_a_at	At5g07910	-	-	2e-5	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.11267.3.S1_a_at	At5g07910	-	-	1e-7	At2g28370	-	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.5720.3.S1_s_at	At5g07910	-	-	2e-5	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	Gma.3757.2.S1_a_at	At5g07910	-	-	8e-35	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.88360.1.S1_at	At5g07910	-	-	1e-7	At1g71980	protease-associated zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage